############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh InterMineR_1.25.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R InterMineR.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=InterMineR.buildbin-libdir InterMineR_1.25.1.tar.gz' >>>>>>> * installing *source* package ‘InterMineR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘intersect’ in package ‘InterMineR’ Creating a new generic function for ‘union’ in package ‘InterMineR’ Creating a new generic function for ‘subtract’ in package ‘InterMineR’ ** help Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:41: unexpected section header '\arguments' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:42: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:50: unexpected section header '\arguments' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:51: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:59: unexpected section header '\arguments' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:60: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:63: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:66: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:69: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:72: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:80: unexpected section header '\arguments' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:81: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:84: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:87: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:90: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:98: unexpected section header '\arguments' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:99: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:102: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:105: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:108: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:116: unexpected section header '\arguments' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:117: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:120: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:123: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:126: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:134: unexpected section header '\arguments' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:135: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:138: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:141: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:144: unknown macro '\item' Warning: /private/tmp/Rtmpcp4qOA/R.INSTALL1818041fb30c5/InterMineR/man/ListManager-methods.Rd:147: unknown macro '\item' *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: multiple methods tables found for ‘union’ Warning: multiple methods tables found for ‘subtract’ Warning: multiple methods tables found for ‘intersect’ Warning: Package 'InterMineR' is deprecated and will be removed from Bioconductor version 3.20 ** testing if installed package can be loaded from final location Warning: multiple methods tables found for ‘union’ Warning: multiple methods tables found for ‘subtract’ Warning: multiple methods tables found for ‘intersect’ Warning: Package 'InterMineR' is deprecated and will be removed from Bioconductor version 3.20 ** testing if installed package keeps a record of temporary installation path * DONE (InterMineR)