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###
### Running command:
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###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data ImmuneSpaceR
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* checking for file ‘ImmuneSpaceR/DESCRIPTION’ ... OK
* preparing ‘ImmuneSpaceR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Intro_to_ImmuneSpaceR.Rmd’ using rmarkdown

Quitting from lines  at lines 68-71 [CreateConnection] (Intro_to_ImmuneSpaceR.Rmd)
Error: processing vignette 'Intro_to_ImmuneSpaceR.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘Intro_to_ImmuneSpaceR.Rmd’

--- re-building ‘getDataset.Rmd’ using rmarkdown

Quitting from lines  at lines 37-40 [CreateConection] (getDataset.Rmd)
Error: processing vignette 'getDataset.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘getDataset.Rmd’

--- re-building ‘getGEMatrix.Rmd’ using rmarkdown

Quitting from lines  at lines 38-41 [CreateConection] (getGEMatrix.Rmd)
Error: processing vignette 'getGEMatrix.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘getGEMatrix.Rmd’

--- re-building ‘interactiveNetrc.Rmd’ using rmarkdown
--- finished re-building ‘interactiveNetrc.Rmd’

--- re-building ‘report_SDY144.Rmd’ using rmarkdown

Quitting from lines  at lines 40-45 [unnamed-chunk-1] (report_SDY144.Rmd)
Error: processing vignette 'report_SDY144.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘report_SDY144.Rmd’

--- re-building ‘report_SDY180.Rmd’ using rmarkdown

Quitting from lines  at lines 57-59 [connection] (report_SDY180.Rmd)
Error: processing vignette 'report_SDY180.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘report_SDY180.Rmd’

--- re-building ‘report_SDY269.Rmd’ using rmarkdown

Quitting from lines  at lines 53-57 [connection] (report_SDY269.Rmd)
Error: processing vignette 'report_SDY269.Rmd' failed with diagnostics:
HTTP request was unsuccessful. Status code = 500, Error message = Error on line 1: Syntax error near 'JTBBJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwJTIwU0VMRUNUJTIwRElTVElOQ1QlMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEZST00lMjBITV9pbnB1dFNhbXBsZXNRdWVyeSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMEdST1VQJTIwQlklMjBleHByZXNzaW9uX21hdHJpeF9hY2Nlc3Npb24lMkMlMjBjb2hvcnRfdHlwZSUwQSUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMCUyMA'
--- failed re-building ‘report_SDY269.Rmd’

SUMMARY: processing the following files failed:
  ‘Intro_to_ImmuneSpaceR.Rmd’ ‘getDataset.Rmd’ ‘getGEMatrix.Rmd’
  ‘report_SDY144.Rmd’ ‘report_SDY180.Rmd’ ‘report_SDY269.Rmd’

Error: Vignette re-building failed.
Execution halted