############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data IRISFGM ### ############################################################################## ############################################################################## * checking for file ‘IRISFGM/DESCRIPTION’ ... OK * preparing ‘IRISFGM’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘IRISFGM_Rpackage.Rmd’ using rmarkdown 2024-05-17 17:14:57.394 R[75931:1858138672] XType: com.apple.fonts is not accessible. 2024-05-17 17:14:57.394 R[75931:1858138672] XType: XTFontStaticRegistry is enabled. Calculating gene variances 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating feature variances of standardized and clipped values 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Quitting from lines 231-234 [Run_dimReduce] (IRISFGM_Rpackage.Rmd) Error: processing vignette 'IRISFGM_Rpackage.Rmd' failed with diagnostics: No layer matching pattern 'data' found. Please run NormalizeData and retry --- failed re-building ‘IRISFGM_Rpackage.Rmd’ SUMMARY: processing the following file failed: ‘IRISFGM_Rpackage.Rmd’ Error: Vignette re-building failed. Execution halted