Back to Multiple platform build/check report for BioC 3.17:   simplified   long
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This page was generated on 2023-09-30 11:36:19 -0400 (Sat, 30 Sep 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 928/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiCDOC 1.2.0  (landing page)
Maign√© √Člise
Snapshot Date: 2023-09-29 14:00:14 -0400 (Fri, 29 Sep 2023)
git_url: https://git.bioconductor.org/packages/HiCDOC
git_branch: RELEASE_3_17
git_last_commit: b6ac9d9
git_last_commit_date: 2023-04-25 11:39:04 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for HiCDOC on palomino3


To the developers/maintainers of the HiCDOC package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCDOC.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HiCDOC
Version: 1.2.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiCDOC.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings HiCDOC_1.2.0.tar.gz
StartedAt: 2023-09-30 03:01:14 -0400 (Sat, 30 Sep 2023)
EndedAt: 2023-09-30 03:08:24 -0400 (Sat, 30 Sep 2023)
EllapsedTime: 429.4 seconds
RetCode: 0
Status:   OK  
CheckDir: HiCDOC.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiCDOC.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings HiCDOC_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.17-bioc/meat/HiCDOC.Rcheck'
* using R version 4.3.1 (2023-06-16 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'HiCDOC/DESCRIPTION' ... OK
* this is package 'HiCDOC' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HiCDOC' can be installed ... OK
* used C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.checkCompartmentAssignment: no visible binding for global variable
  'chromosome'
.checkPca : f: no visible binding for global variable 'compartment'
.checkResults: no visible binding for global variable
  'assignment.check'
.computePValues: no visible binding for global variable 'condition'
.computePValues: no visible binding for global variable 'chromosome'
.computePValues: no visible binding for global variable 'index'
.computePValues: no visible global function definition for '.'
.computePValues: no visible binding for global variable 'concordance'
.computePValues: no visible binding for global variable 'condition.1'
.computePValues: no visible binding for global variable 'condition.2'
.computePValues: no visible binding for global variable 'concordance.1'
.computePValues: no visible binding for global variable 'concordance.2'
.computePValues: no visible binding for global variable 'compartment'
.computePValues: no visible binding for global variable 'compartment.1'
.computePValues: no visible binding for global variable 'compartment.2'
.computePValues: no visible binding for global variable 'H0_value'
.computePValues: no visible binding for global variable 'difference'
.computePValues : <anonymous>: no visible binding for global variable
  'difference'
.computePValues: no visible binding for global variable 'pvalue'
.computePValues: no visible binding for global variable
  'pvalue.adjusted'
.computePValues: no visible binding for global variable 'direction'
.computePca: no visible binding for global variable 'chromosome'
.computePca: no visible global function definition for '.'
.computePca: no visible binding for global variable 'condition'
.computePca: no visible binding for global variable 'compartment'
.computePca: no visible binding for global variable 'centroid'
.computeSelfInteractionRatios: no visible global function definition
  for '.'
.computeSelfInteractionRatios: no visible binding for global variable
  'index'
.computeSelfInteractionRatios: no visible binding for global variable
  'ratio'
.computeSelfInteractionRatios: no visible binding for global variable
  'variable'
.computeSelfInteractionRatios: no visible binding for global variable
  'chromosome'
.computeSelfInteractionRatios: no visible binding for global variable
  'condition'
.determineChromosomeSizes: no visible binding for global variable
  'minIndex'
.determineChromosomeSizes: no visible binding for global variable
  'index'
.determineChromosomeSizes: no visible global function definition for
  '.'
.determineChromosomeSizes: no visible binding for global variable
  'minStart'
.filterWeakPositionsOfChromosome: no visible global function definition
  for '.'
.filterWeakPositionsOfChromosome: no visible binding for global
  variable 'index1'
.filterWeakPositionsOfChromosome: no visible binding for global
  variable 'index2'
.filterWeakPositionsOfChromosome: no visible binding for global
  variable 'value'
.filterWeakPositionsOfChromosome: no visible binding for global
  variable 'variable'
.filterWeakPositionsOfChromosome: no visible binding for global
  variable 'index'
.formatDetectCompartment: no visible binding for global variable
  'chromosome'
.formatDetectCompartment: no visible global function definition for '.'
.formatDetectCompartment: no visible binding for global variable
  'index'
.formatDetectCompartment: no visible binding for global variable
  'condition'
.formatDetectCompartment: no visible binding for global variable
  'compartment'
.formatDetectCompartment: no visible binding for global variable
  'concordance'
.formatDetectCompartment: no visible binding for global variable
  'significance'
.formatDetectCompartment: no visible binding for global variable
  'pvalue.adjusted'
.formatDetectCompartment: no visible binding for global variable
  'condition.1'
.formatDetectCompartment: no visible binding for global variable
  'condition.2'
.formatDetectCompartment: no visible binding for global variable
  'pvalue'
.formatDetectCompartment: no visible binding for global variable
  'direction'
.formatDetectCompartment: no visible binding for global variable
  'centroid.check'
.formatDetectCompartment: no visible binding for global variable
  'PC1.check'
.formatDetectCompartment: no visible binding for global variable
  'assignment.check'
.messageCheck: no visible binding for global variable 'chromosome'
.normalizeDistanceEffectOfChromosome: no visible binding for global
  variable 'value'
.normalizeDistanceEffectOfChromosome: no visible binding for global
  variable 'logvalue'
.normalizeDistanceEffectOfChromosome: no visible binding for global
  variable 'logdistance'
.normalizeDistanceEffectOfChromosome: no visible binding for global
  variable 'bias'
.parseOneCool: no visible binding for global variable 'chromosome'
.parseOneCool: no visible binding for global variable 'index'
.parseOneCool: no visible binding for global variable 'id1'
.parseOneCool: no visible binding for global variable 'id2'
.parseOneHiCPro: no visible binding for global variable 'chromosome'
.parseOneHiCPro: no visible binding for global variable 'index'
.parseOneHiCPro: no visible binding for global variable 'startIndex'
.parseOneHiCPro: no visible binding for global variable 'stopIndex'
.plotInteractionsGrid: no visible binding for global variable 'start1'
.plotInteractionsGrid: no visible binding for global variable 'start2'
.plotInteractionsWrap: no visible binding for global variable 'start1'
.plotInteractionsWrap: no visible binding for global variable 'start2'
.predictCompartmentsAB: no visible binding for global variable
  'offDiagonal'
.predictCompartmentsAB: no visible binding for global variable 'ratio'
.predictCompartmentsAB: no visible global function definition for '.'
.predictCompartmentsAB: no visible binding for global variable
  'chromosome'
.predictCompartmentsAB: no visible binding for global variable
  'cluster'
.predictCompartmentsAB: no visible binding for global variable 'A'
.predictCompartmentsAB: no visible binding for global variable '1'
.predictCompartmentsAB: no visible binding for global variable '2'
.predictCompartmentsAB: no visible binding for global variable
  'compartment'
.predictCompartmentsAB: no visible binding for global variable 'change'
.predictCompartmentsAB: no visible binding for global variable
  'concordance'
.reduceHiCDOCChromosomes: no visible binding for global variable
  'chromosome'
.reduceHiCDOCConditions: no visible binding for global variable
  'condition'
.setFromTabular: no visible binding for global variable 'chromosome'
.setFromTabular: no visible binding for global variable 'position 1'
.setFromTabular: no visible binding for global variable 'position 2'
.setFromTabular: no visible global function definition for '.'
.setFromTabular: no visible binding for global variable 'bin.1'
.setFromTabular: no visible binding for global variable 'bin.2'
.setFromTabular: no visible binding for global variable 'variable'
.setFromTabular: no visible binding for global variable 'indexC'
.setFromTabular: no visible binding for global variable 'index'
.tieCentroids: no visible binding for global variable 'cluster'
.tieCentroids: no visible binding for global variable 'condition'
.tieCentroids: no visible binding for global variable 'chromosome'
.tieCentroids: no visible global function definition for '.'
.tieCentroids: no visible binding for global variable 'centroid'
.tieCentroids: no visible binding for global variable 'cluster.1'
.tieCentroids: no visible binding for global variable 'cluster.2'
.tieCentroids: no visible binding for global variable 'change'
.tieCentroids: no visible binding for global variable 'concordance'
.tieCentroids: no visible binding for global variable 'compartment'
normalizeTechnicalBiases: no visible global function definition for '.'
normalizeTechnicalBiases: no visible binding for global variable
  'seqnames1'
normalizeTechnicalBiases: no visible binding for global variable
  'start1'
normalizeTechnicalBiases: no visible binding for global variable
  'start2'
normalizeTechnicalBiases: no visible binding for global variable
  'chromosome'
plotCentroids: no visible binding for global variable 'PC1'
plotCentroids: no visible binding for global variable 'PC2'
plotCentroids: no visible binding for global variable 'compartment'
plotCentroids: no visible binding for global variable 'condition'
plotCompartments: no visible binding for global variable 'position'
plotCompartments: no visible binding for global variable 'compartment'
plotCompartments: no visible binding for global variable 'condition'
plotConcordanceDifferences: no visible binding for global variable
  'changed'
plotConcordanceDifferences: no visible binding for global variable
  'compartment.1'
plotConcordanceDifferences: no visible binding for global variable
  'compartment.2'
plotConcordanceDifferences: no visible binding for global variable
  'difference'
plotConcordances: no visible binding for global variable 'condition'
plotConcordances: no visible binding for global variable
  'pvalue.adjusted'
plotConcordances: no visible binding for global variable 'concordance'
plotInteractions: no visible global function definition for '.'
plotInteractions: no visible binding for global variable 'seqnames1'
plotInteractions: no visible binding for global variable 'start1'
plotInteractions: no visible binding for global variable 'start2'
plotInteractions: no visible binding for global variable 'variable'
plotInteractions: no visible binding for global variable 'condition'
plotSelfInteractionRatios: no visible global function definition for
  '.'
plotSelfInteractionRatios: no visible binding for global variable
  'condition'
plotSelfInteractionRatios: no visible binding for global variable
  'index'
plotSelfInteractionRatios: no visible binding for global variable
  'compartment'
plotSelfInteractionRatios: no visible binding for global variable
  'ratio'
concordances,HiCDOCDataSet: no visible binding for global variable
  'centroid.check'
concordances,HiCDOCDataSet: no visible binding for global variable
  'PC1.check'
concordances,HiCDOCDataSet: no visible binding for global variable
  'assignment.check'
concordances,HiCDOCDataSet: no visible binding for global variable
  'chromosome'
Undefined global functions or variables:
  . 1 2 A H0_value PC1 PC1.check PC2 assignment.check bias bin.1 bin.2
  centroid centroid.check change changed chromosome cluster cluster.1
  cluster.2 compartment compartment.1 compartment.2 concordance
  concordance.1 concordance.2 condition condition.1 condition.2
  difference direction id1 id2 index index1 index2 indexC logdistance
  logvalue minIndex minStart offDiagonal position position 1 position 2
  pvalue pvalue.adjusted ratio seqnames1 significance start1 start2
  startIndex stopIndex value variable
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.17-bioc/R/library/HiCDOC/libs/x64/HiCDOC.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
HiCDOC                   57.14   4.03   61.20
normalizeTechnicalBiases 54.73   1.03   55.81
plotDistanceEffect       23.69   1.39   25.08
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'F:/biocbuild/bbs-3.17-bioc/meat/HiCDOC.Rcheck/00check.log'
for details.



Installation output

HiCDOC.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL HiCDOC
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'HiCDOC' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c constrainedClustering.cpp -o constrainedClustering.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include" -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c parseHiCFile.cpp -o parseHiCFile.o
g++ -shared -s -static-libgcc -o HiCDOC.dll tmp.def RcppExports.o constrainedClustering.o parseHiCFile.o -LF:/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-HiCDOC/00new/HiCDOC/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HiCDOC)

Tests output

HiCDOC.Rcheck/tests/testthat.Rout


R version 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(HiCDOC)
Loading required package: InteractionSet
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:MatrixGenerics':

    rowMedians

The following objects are masked from 'package:matrixStats':

    anyMissing, rowMedians

> 
> test_check("HiCDOC")
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 333 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 333 ]
> 
> proc.time()
   user  system elapsed 
  53.93    3.39   57.53 

Example timings

HiCDOC.Rcheck/HiCDOC-Ex.timings

nameusersystemelapsed
HiCDOC57.14 4.0361.20
HiCDOCDataSet-methods0.110.000.11
HiCDOCDataSet-parameters0.020.000.02
HiCDOCDataSetFromCool000
HiCDOCDataSetFromHiC000
HiCDOCDataSetFromHiCPro000
HiCDOCDataSetFromTabular0.170.020.18
detectCompartments2.310.092.42
exampleHiCDOCDataSet0.020.000.02
exampleHiCDOCDataSetProcessed0.010.020.03
filterSmallChromosomes0.050.000.05
filterSparseReplicates0.110.000.11
filterWeakPositions0.370.010.42
normalizeBiologicalBiases1.600.061.66
normalizeDistanceEffect1.890.101.98
normalizeTechnicalBiases54.73 1.0355.81
plotCentroids0.320.010.34
plotCompartmentChanges1.490.051.53
plotCompartments0.390.020.41
plotConcordanceDifferences0.230.010.25
plotConcordances0.350.030.37
plotDistanceEffect23.69 1.3925.08
plotInteractions0.760.020.78
plotSelfInteractionRatios0.330.030.36
reduceHiCDOCDataSet0.030.020.05