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This page was generated on 2024-03-29 11:36:51 -0400 (Fri, 29 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4404
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4427
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 947/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HIBAG 1.38.2  (landing page)
Xiuwen Zheng
Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/HIBAG
git_branch: RELEASE_3_18
git_last_commit: a1b52dd
git_last_commit_date: 2024-01-25 01:08:53 -0400 (Thu, 25 Jan 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD BIN results for HIBAG on palomino4


To the developers/maintainers of the HIBAG package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HIBAG.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HIBAG
Version: 1.38.2
Command: rm -rf HIBAG.buildbin-libdir && mkdir HIBAG.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=HIBAG.buildbin-libdir HIBAG_1.38.2.tar.gz
StartedAt: 2024-03-28 07:11:08 -0400 (Thu, 28 Mar 2024)
EndedAt: 2024-03-28 07:11:59 -0400 (Thu, 28 Mar 2024)
EllapsedTime: 51.6 seconds
RetCode: 0
Status:   OK  
PackageFile: HIBAG_1.38.2.zip
PackageFileSize: 1.987 MiB

Command output

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###
### Running command:
###
###   rm -rf HIBAG.buildbin-libdir && mkdir HIBAG.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=HIBAG.buildbin-libdir HIBAG_1.38.2.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'HIBAG' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.3.0'
using C++ compiler: 'G__~1.EXE (GCC) 12.3.0'
using C++11
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/RcppParallel/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c HIBAG.cpp -o HIBAG.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/RcppParallel/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c LibHLA.cpp -o LibHLA.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/RcppParallel/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c LibHLA_ext_avx.cpp -o LibHLA_ext_avx.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/RcppParallel/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c LibHLA_ext_avx2.cpp -o LibHLA_ext_avx2.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/RcppParallel/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -ffixed-xmm16 -ffixed-xmm17 -ffixed-xmm18 -ffixed-xmm19 -ffixed-xmm20 -ffixed-xmm21 -ffixed-xmm22 -ffixed-xmm23 -ffixed-xmm24 -ffixed-xmm25 -ffixed-xmm26 -ffixed-xmm27 -ffixed-xmm28 -ffixed-xmm29 -ffixed-xmm30 -ffixed-xmm31 LibHLA_ext_avx512bw.cpp -c -o LibHLA_ext_avx512bw.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/RcppParallel/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -ffixed-xmm16 -ffixed-xmm17 -ffixed-xmm18 -ffixed-xmm19 -ffixed-xmm20 -ffixed-xmm21 -ffixed-xmm22 -ffixed-xmm23 -ffixed-xmm24 -ffixed-xmm25 -ffixed-xmm26 -ffixed-xmm27 -ffixed-xmm28 -ffixed-xmm29 -ffixed-xmm30 -ffixed-xmm31 LibHLA_ext_avx512f.cpp -c -o LibHLA_ext_avx512f.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/RcppParallel/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -ffixed-xmm16 -ffixed-xmm17 -ffixed-xmm18 -ffixed-xmm19 -ffixed-xmm20 -ffixed-xmm21 -ffixed-xmm22 -ffixed-xmm23 -ffixed-xmm24 -ffixed-xmm25 -ffixed-xmm26 -ffixed-xmm27 -ffixed-xmm28 -ffixed-xmm29 -ffixed-xmm30 -ffixed-xmm31 LibHLA_ext_avx512vpopcnt.cpp -c -o LibHLA_ext_avx512vpopcnt.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/RcppParallel/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c LibHLA_ext_sse2.cpp -o LibHLA_ext_sse2.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/RcppParallel/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1 -I../inst/include   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c LibHLA_ext_sse4_2.cpp -o LibHLA_ext_sse4_2.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.18-bioc/R/library/RcppParallel/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c samtools_ext.c -o samtools_ext.o
g++ -shared -s -static-libgcc -o HIBAG.dll tmp.def HIBAG.o LibHLA.o LibHLA_ext_avx.o LibHLA_ext_avx2.o LibHLA_ext_avx512bw.o LibHLA_ext_avx512f.o LibHLA_ext_avx512vpopcnt.o LibHLA_ext_sse2.o LibHLA_ext_sse4_2.o samtools_ext.o -LF:/biocbuild/bbs-3.18-bioc/R/library/RcppParallel/lib/x64 -ltbb -ltbbmalloc -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/meat/HIBAG.buildbin-libdir/00LOCK-HIBAG/00new/HIBAG/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'HIBAG' as HIBAG_1.38.2.zip
* DONE (HIBAG)