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BUILD BIN report for HEM on merida1

This page was generated on 2021-01-19 11:57:33 -0500 (Tue, 19 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE HEM PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 825/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HEM 1.62.0
HyungJun Cho
Snapshot Date: 2021-01-18 14:42:24 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/HEM
Branch: RELEASE_3_12
Last Commit: 9f7f3a0
Last Changed Date: 2020-10-27 10:24:21 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: HEM
Version: 1.62.0
Command: rm -rf HEM.buildbin-libdir && mkdir HEM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HEM_1.62.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R HEM.buildbin-libdir
StartedAt: 2021-01-19 08:54:54 -0500 (Tue, 19 Jan 2021)
EndedAt: 2021-01-19 08:55:59 -0500 (Tue, 19 Jan 2021)
EllapsedTime: 64.5 seconds
RetCode: 0
Status:  OK 
PackageFile: HEM_1.62.0.tgz
PackageFileSize: 631.1 KiB

Command output

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###
### Running command:
###
###   rm -rf HEM.buildbin-libdir && mkdir HEM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HEM_1.62.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R HEM.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=HEM.buildbin-libdir HEM_1.62.0.tar.gz'
>>>>>>> 

* installing *source* package ‘HEM’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c hem.c -o hem.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o HEM.so hem.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/HEM.buildbin-libdir/00LOCK-HEM/00new/HEM/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HEM)


>>>>>>> 
>>>>>>> FIXING LINKS FOR HEM.buildbin-libdir/HEM/libs/HEM.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "HEM.buildbin-libdir/HEM/libs/HEM.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "HEM.buildbin-libdir/HEM/libs/HEM.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "HEM.buildbin-libdir/HEM/libs/HEM.so"