Back to Multiple platform build/check report for BioC 3.17:   simplified   long
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-10-04 11:36:29 -0400 (Wed, 04 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 849/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GlobalAncova 4.18.0  (landing page)
Manuela Hummel
Snapshot Date: 2023-10-03 14:00:15 -0400 (Tue, 03 Oct 2023)
git_url: https://git.bioconductor.org/packages/GlobalAncova
git_branch: RELEASE_3_17
git_last_commit: 198084f
git_last_commit_date: 2023-04-25 09:42:34 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

BUILD BIN results for GlobalAncova on palomino3


To the developers/maintainers of the GlobalAncova package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GlobalAncova.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GlobalAncova
Version: 4.18.0
Command: rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=GlobalAncova.buildbin-libdir GlobalAncova_4.18.0.tar.gz
StartedAt: 2023-10-04 08:55:51 -0400 (Wed, 04 Oct 2023)
EndedAt: 2023-10-04 08:56:28 -0400 (Wed, 04 Oct 2023)
EllapsedTime: 36.7 seconds
RetCode: 0
Status:   OK  
PackageFile: GlobalAncova_4.18.0.zip
PackageFileSize: 1.362 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=GlobalAncova.buildbin-libdir GlobalAncova_4.18.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'GlobalAncova' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:186:16: warning: 'ord_perm' may be used uninitialized [-Wmaybe-uninitialized]
  186 |             n1 =  ord_perm[j] ;
      |             ~~~^~~~~~~~~~~~~~
GlobalAncova.c:166:8: note: 'ord_perm' was declared here
  166 |   int *ord_perm ;
      |        ^~~~~~~~
GlobalAncova.c: In function 'permut':
GlobalAncova.c:289:16: warning: 'ord_perm' may be used uninitialized [-Wmaybe-uninitialized]
  289 |             n1 =  ord_perm[j] ;
      |             ~~~^~~~~~~~~~~~~~
GlobalAncova.c:268:8: note: 'ord_perm' was declared here
  268 |   int *ord_perm ;
      |        ^~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ludcmp.c -o ludcmp.o
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c matrix.c -o matrix.o
gcc -shared -s -static-libgcc -o GlobalAncova.dll tmp.def GlobalAncova.o ludcmp.o matrix.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/meat/GlobalAncova.buildbin-libdir/00LOCK-GlobalAncova/00new/GlobalAncova/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GlobalAncova' as GlobalAncova_4.18.0.zip
* DONE (GlobalAncova)