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### Running command:
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###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:GeneticsPed.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings GeneticsPed_1.66.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/GeneticsPed.Rcheck’
* using R version 4.4.0 beta (2024-04-15 r86425)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GeneticsPed/DESCRIPTION’ ... OK
* this is package ‘GeneticsPed’ version ‘1.66.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GeneticsPed’ can be installed ... WARNING
Found the following significant warnings:
  pedtemplate.cc:373:15: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘__gnu_cxx::__normal_iterator<TPed*, std::vector<TPed> >::difference_type’ {aka ‘long int’} [-Wformat=]
See ‘/home/biocbuild/bbs-3.19-bioc/meat/GeneticsPed.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 10.3.1’
* used Fortran compiler: ‘GNU Fortran (GCC) 10.3.1’
* used C++ compiler: ‘g++ (GCC) 10.3.1’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
generatePedigree: no visible global function definition for ‘runif’
model.matrix.Pedigree: no visible global function definition for
  ‘model.matrix’
writeMendel: no visible global function definition for ‘?’
writeMendel: no visible global function definition for ‘write.csv’
Undefined global functions or variables:
  ? model.matrix runif write.csv
Consider adding
  importFrom("stats", "model.matrix", "runif")
  importFrom("utils", "?", "write.csv")
to your NAMESPACE file.
* checking Rd files ... NOTE
checkRd: (-1) pedigree.Rd:166-167: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:168-169: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:170-171: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:172: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:173: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:174: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:175: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:176: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:177-178: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:179-180: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:181: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:182: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:183: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:184: Lost braces in \itemize; meant \describe ?
checkRd: (-1) pedigree.Rd:185-187: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘doRUnit.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-bioc/meat/GeneticsPed.Rcheck/00check.log’
for details.