############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL GeneSelectMMD ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’ * installing *source* package ‘GeneSelectMMD’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 10.3.1’ using Fortran compiler: ‘GNU Fortran (GCC) 10.3.1’ gcc -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c GeneSelectMMD_init.c -o GeneSelectMMD_init.o gfortran -fPIC -g -O2 -Wall -c Qfunc.f -o Qfunc.o gfortran -fPIC -g -O2 -Wall -c blas.f -o blas.o gcc -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c isnan.c -o isnan.o gfortran -fPIC -g -O2 -Wall -c lbfgsb.f -o lbfgsb.o lbfgsb.f:1409:25: 1409 | + tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm, | ^ Warning: ‘tu’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbfgsb.f:1482:72: 1482 | t(nbreak) = tl/(-neggi) | ^ Warning: ‘tl’ may be used uninitialized in this function [-Wmaybe-uninitialized] gfortran -fPIC -g -O2 -Wall -c lbfgsbDriver.f -o lbfgsbDriver.o lbfgsbDriver.f:243:71: 243 | + wa(2*mmax*nmax + 5*nmax + 11*mmax*mmax + 8*mmax) | 1 Warning: Array ‘wa’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider using ‘-frecursive’, or increase the ‘-fmax-stack-var-size=’ limit, or change the code to use an ALLOCATABLE array. [-Wsurprising] gfortran -fPIC -g -O2 -Wall -c linpack.f -o linpack.o gfortran -fPIC -g -O2 -Wall -c llkhFun.f -o llkhFun.o gfortran -fPIC -g -O2 -Wall -c myTtest.f -o myTtest.o gfortran -fPIC -g -O2 -Wall -c paraEstLoop.f -o paraEstLoop.o gcc -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c pt.c -o pt.o gfortran -fPIC -g -O2 -Wall -c timer.f -o timer.o gfortran -fPIC -g -O2 -Wall -c wiFun.f -o wiFun.o gcc -shared -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -L/usr/local/lib -o GeneSelectMMD.so GeneSelectMMD_init.o Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -lgfortran -lm -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -lR installing to /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GeneSelectMMD)