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This page was generated on 2023-09-22 11:36:28 -0400 (Fri, 22 Sep 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4625
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4378
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4394
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 867/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOsummaries 2.36.0  (landing page)
Raivo Kolde
Snapshot Date: 2023-09-21 14:00:15 -0400 (Thu, 21 Sep 2023)
git_url: https://git.bioconductor.org/packages/GOsummaries
git_branch: RELEASE_3_17
git_last_commit: 14e96af
git_last_commit_date: 2023-04-25 10:34:30 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  OK    ERROR  skippedskipped

BUILD results for GOsummaries on palomino3


To the developers/maintainers of the GOsummaries package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GOsummaries.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: GOsummaries
Version: 2.36.0
Command: chmod a+r GOsummaries -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GOsummaries
StartedAt: 2023-09-21 19:37:12 -0400 (Thu, 21 Sep 2023)
EndedAt: 2023-09-21 19:37:40 -0400 (Thu, 21 Sep 2023)
EllapsedTime: 27.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r GOsummaries -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GOsummaries
###
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* checking for file 'GOsummaries/DESCRIPTION' ... OK
* preparing 'GOsummaries':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'GOsummaries-basics.Rnw' using Sweave
This is vegan 2.6-4
Warning: Please consider using the new package "gprofiler2". At the moment you are using a deprecated package relying on outdated data.
  More information at https://biit.cs.ut.ee/gprofiler/page/r-new. Feel free to contact us at biit.support@ut.ee for further help.

Error: processing vignette 'GOsummaries-basics.Rnw' failed with diagnostics:
 chunk 3 (label = example1) 
Error : INTERNAL SERVER ERROR


--- failed re-building 'GOsummaries-basics.Rnw'

SUMMARY: processing the following file failed:
  'GOsummaries-basics.Rnw'

Error: Vignette re-building failed.
Execution halted