Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2021-12-01 17:17:48 -0500 (Wed, 01 Dec 2021).

CHECK results for ExperimentHub on tokay2

To the developers/maintainers of the ExperimentHub package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ExperimentHub.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 615/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ExperimentHub 2.2.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-11-30 04:15:05 -0500 (Tue, 30 Nov 2021)
git_url: https://git.bioconductor.org/packages/ExperimentHub
git_branch: RELEASE_3_14
git_last_commit: b6b9dbb
git_last_commit_date: 2021-10-26 12:25:51 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ExperimentHub
Version: 2.2.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ExperimentHub.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ExperimentHub_2.2.0.tar.gz
StartedAt: 2021-11-30 22:23:08 -0500 (Tue, 30 Nov 2021)
EndedAt: 2021-11-30 22:25:47 -0500 (Tue, 30 Nov 2021)
EllapsedTime: 159.4 seconds
RetCode: 0
Status:   OK  
CheckDir: ExperimentHub.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ExperimentHub.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings ExperimentHub_2.2.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/ExperimentHub.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ExperimentHub/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ExperimentHub' version '2.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ExperimentHub' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'curl'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
createHubAccessors : <anonymous>: no visible binding for global
  variable 'title'
Undefined global functions or variables:
  title
Consider adding
  importFrom("graphics", "title")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/ExperimentHub.Rcheck/00check.log'
for details.



Installation output

ExperimentHub.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ExperimentHub_2.2.0.tar.gz && rm -rf ExperimentHub.buildbin-libdir && mkdir ExperimentHub.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExperimentHub.buildbin-libdir ExperimentHub_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ExperimentHub_2.2.0.zip && rm ExperimentHub_2.2.0.tar.gz ExperimentHub_2.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 14401  100 14401    0     0   122k      0 --:--:-- --:--:-- --:--:--  123k

install for i386

* installing *source* package 'ExperimentHub' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ExperimentHub'
    finding HTML links ... done
    ExperimentHub-class                     html  
    getExperimentHubOption                  html  
    listResources                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ExperimentHub' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ExperimentHub' as ExperimentHub_2.2.0.zip
* DONE (ExperimentHub)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ExperimentHub' successfully unpacked and MD5 sums checked

Tests output


Example timings

ExperimentHub.Rcheck/examples_i386/ExperimentHub-Ex.timings

nameusersystemelapsed
ExperimentHub-class3.780.484.92
getExperimentHubOption000
listResources000

ExperimentHub.Rcheck/examples_x64/ExperimentHub-Ex.timings

nameusersystemelapsed
ExperimentHub-class3.850.254.70
getExperimentHubOption000
listResources000