Back to Multiple platform build/check report for BioC 3.18: simplified long |
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This page was generated on 2024-03-29 11:36:45 -0400 (Fri, 29 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4669 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4404 |
merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4427 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 641/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
EnrichmentBrowser 2.32.0 (landing page) Ludwig Geistlinger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the EnrichmentBrowser package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EnrichmentBrowser.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: EnrichmentBrowser |
Version: 2.32.0 |
Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:EnrichmentBrowser.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings EnrichmentBrowser_2.32.0.tar.gz |
StartedAt: 2024-03-28 00:34:02 -0400 (Thu, 28 Mar 2024) |
EndedAt: 2024-03-28 00:40:54 -0400 (Thu, 28 Mar 2024) |
EllapsedTime: 412.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: EnrichmentBrowser.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:EnrichmentBrowser.install-out.txt --library=F:\biocbuild\bbs-3.18-bioc\R\library --no-vignettes --timings EnrichmentBrowser_2.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.18-bioc/meat/EnrichmentBrowser.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'EnrichmentBrowser/DESCRIPTION' ... OK * this is package 'EnrichmentBrowser' version '2.32.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'EnrichmentBrowser' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: 'pathview:::parseKGML2Graph2' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .getGOFromBiomart: no visible binding for global variable 'go_linkage_type' Undefined global functions or variables: go_linkage_type * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ebrowser 87.61 16.26 107.96 getGenesets 14.68 1.04 19.77 eaBrowse 9.44 1.67 11.37 compileGRN 4.92 0.10 5.03 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'F:/biocbuild/bbs-3.18-bioc/meat/EnrichmentBrowser.Rcheck/00check.log' for details.
EnrichmentBrowser.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL EnrichmentBrowser ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library' * installing *source* package 'EnrichmentBrowser' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EnrichmentBrowser)
EnrichmentBrowser.Rcheck/EnrichmentBrowser-Ex.timings
name | user | system | elapsed | |
combResults | 1.29 | 0.00 | 1.30 | |
compileGRN | 4.92 | 0.10 | 5.03 | |
configEBrowser | 0 | 0 | 0 | |
deAna | 4.42 | 0.43 | 4.85 | |
downloadPathways | 0 | 0 | 0 | |
eaBrowse | 9.44 | 1.67 | 11.37 | |
ebrowser | 87.61 | 16.26 | 107.96 | |
getGenesets | 14.68 | 1.04 | 19.77 | |
ggeaGraph | 4.45 | 0.04 | 4.50 | |
idMap | 0.89 | 0.49 | 1.38 | |
import | 4.38 | 0.23 | 4.62 | |
isAvailable | 0 | 0 | 0 | |
makeExampleData | 0.03 | 0.00 | 0.03 | |
nbea | 0.25 | 0.00 | 0.25 | |
normalize | 0.77 | 0.12 | 0.89 | |
plots | 2.42 | 1.03 | 2.93 | |
probe2gene | 0.11 | 0.05 | 0.14 | |
readSE | 0.06 | 0.03 | 0.06 | |
sbea | 0.27 | 0.05 | 0.27 | |