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This page was generated on 2021-12-03 13:05:11 -0500 (Fri, 03 Dec 2021).

BUILD BIN results for CytoTree on tokay2

To the developers/maintainers of the CytoTree package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CytoTree.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 444/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CytoTree 1.4.0  (landing page)
Yuting Dai
Snapshot Date: 2021-12-02 01:55:06 -0500 (Thu, 02 Dec 2021)
git_url: https://git.bioconductor.org/packages/CytoTree
git_branch: RELEASE_3_14
git_last_commit: c190c92
git_last_commit_date: 2021-10-26 13:00:49 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  NO, package depends on 'destiny' which is not available
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  NO, package depends on 'destiny' which is not available

Summary

Package: CytoTree
Version: 1.4.0
Command: rm -rf CytoTree.buildbin-libdir && mkdir CytoTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CytoTree.buildbin-libdir CytoTree_1.4.0.tar.gz
StartedAt: 2021-12-03 07:08:43 -0500 (Fri, 03 Dec 2021)
EndedAt: 2021-12-03 07:10:26 -0500 (Fri, 03 Dec 2021)
EllapsedTime: 103.1 seconds
RetCode: 0
Status:   OK  
PackageFile: CytoTree_1.4.0.zip
PackageFileSize: 4.245 MiB

Command output

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###
### Running command:
###
###   rm -rf CytoTree.buildbin-libdir && mkdir CytoTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CytoTree.buildbin-libdir CytoTree_1.4.0.tar.gz
###
##############################################################################
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install for i386

* installing *source* package 'CytoTree' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c jaccard_coeff.cpp -o jaccard_coeff.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CytoTree.dll tmp.def RcppExports.o jaccard_coeff.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/CytoTree.buildbin-libdir/00LOCK-CytoTree/00new/CytoTree/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'
** help
*** installing help indices
  converting help for package 'CytoTree'
    finding HTML links ... done
    CYT-class                               html  
    CytoTree-package                        html  
    Rphenograph                             html  
    buildTree                               html  
    constraintMatrix                        html  
    correctBatchCYT                         html  
    createCYT                               html  
    defLeafCells                            html  
    defRootCells                            html  
    fetchCell                               html  
    fetchClustMeta                          html  
    fetchPlotMeta                           html  
    find_neighbors                          html  
    gatingMatrix                            html  
    plot2D                                  html  
    plot3D                                  html  
    plotBranchHeatmap                       html  
    plotCluster                             html  
    plotClusterHeatmap                      html  
    plotHeatmap                             html  
    plotMarkerDensity                       html  
    plotPieCluster                          html  
    plotPieTree                             html  
    plotPseudotimeDensity                   html  
    plotPseudotimeTraj                      html  
    plotTrajHeatmap                         html  
    plotTree                                html  
    plotViolin                              html  
    processingCluster                       html  
    runClara                                html  
    runCluster                              html  
    runDiff                                 html  
    runDiffusionMap                         html  
    runExprsExtract                         html  
    runExprsMerge                           html  
    runFastPCA                              html  
    runHclust                               html  
    runKNN                                  html  
    runKmeans                               html  
    runMclust                               html  
    runPhenograph                           html  
    runPseudotime                           html  
    runSOM                                  html  
    finding level-2 HTML links ... done

    runTSNE                                 html  
    runUMAP                                 html  
    runWalk                                 html  
    show-CYT-method                         html  
    subsetCYT                               html  
    updateClustMeta                         html  
    updatePlotMeta                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'
** testing if installed package can be loaded from final location
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CytoTree' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c jaccard_coeff.cpp -o jaccard_coeff.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CytoTree.dll tmp.def RcppExports.o jaccard_coeff.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/CytoTree.buildbin-libdir/CytoTree/libs/x64
** testing if installed package can be loaded
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'
* MD5 sums
packaged installation of 'CytoTree' as CytoTree_1.4.0.zip
* DONE (CytoTree)