############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Cepo ### ############################################################################## ############################################################################## * checking for file ‘Cepo/DESCRIPTION’ ... OK * preparing ‘Cepo’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘cepo.Rmd’ using rmarkdown 2024-05-16 16:13:57.678 R[85613:1845772138] XType: com.apple.fonts is not accessible. 2024-05-16 16:13:57.679 R[85613:1845772138] XType: XTFontStaticRegistry is enabled. Quitting from lines 284-297 [gsea] (cepo.Rmd) Error: processing vignette 'cepo.Rmd' failed with diagnostics: unable to find an inherited method for function 'geneIds' for signature 'object = "list"' --- failed re-building ‘cepo.Rmd’ SUMMARY: processing the following file failed: ‘cepo.Rmd’ Error: Vignette re-building failed. Execution halted