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This page was generated on 2021-10-26 14:08:29 -0400 (Tue, 26 Oct 2021).

CHECK results for CellScore on machv2

To the developers/maintainers of the CellScore package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellScore.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 274/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellScore 1.13.0  (landing page)
Nancy Mah
Snapshot Date: 2021-10-25 14:50:11 -0400 (Mon, 25 Oct 2021)
git_url: https://git.bioconductor.org/packages/CellScore
git_branch: master
git_last_commit: 52dc45a
git_last_commit_date: 2021-05-19 12:33:25 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  

Summary

Package: CellScore
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:CellScore.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings CellScore_1.13.0.tar.gz
StartedAt: 2021-10-26 01:29:33 -0400 (Tue, 26 Oct 2021)
EndedAt: 2021-10-26 01:36:42 -0400 (Tue, 26 Oct 2021)
EllapsedTime: 429.2 seconds
RetCode: 0
Status:   OK  
CheckDir: CellScore.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:CellScore.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings CellScore_1.13.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/CellScore.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CellScore/DESCRIPTION’ ... OK
* this is package ‘CellScore’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CellScore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                 user system elapsed
CellScoreReport                55.909  1.659  57.632
heatmapOnOffMarkers            42.149  1.531  43.709
RugplotCellScore               39.381  1.275  40.680
extractTransitions             38.627  1.223  39.880
ScatterplotCellScoreComponents 37.286  1.283  38.677
PlotCosineSimHeatmap           32.424  0.775  33.224
CellScore                      26.852  0.977  27.847
BoxplotCellScore               26.150  1.251  27.423
PcaStandards                   22.509  0.387  22.916
CosineSimScore                 20.853  0.587  21.455
BarplotOnOff                   13.263  1.627  14.933
OnOff                          10.821  0.971  11.800
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

CellScore.Rcheck/00install.out

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CellScore
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘CellScore’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellScore)

Tests output


Example timings

CellScore.Rcheck/CellScore-Ex.timings

nameusersystemelapsed
BarplotOnOff13.263 1.62714.933
BoxplotCellScore26.150 1.25127.423
CellScore26.852 0.97727.847
CellScoreReport55.909 1.65957.632
CosineSimScore20.853 0.58721.455
OnOff10.821 0.97111.800
PcaStandards22.509 0.38722.916
PlotCosineSimHeatmap32.424 0.77533.224
RugplotCellScore39.381 1.27540.680
ScatterplotCellScoreComponents37.286 1.28338.677
extractTransitions38.627 1.22339.880
heatmapOnOffMarkers42.149 1.53143.709
rugplotDonorTargetTest0.0000.0010.001
scatterplotDonorTargetTest0.0010.0010.002