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This page was generated on 2024-03-29 11:35:51 -0400 (Fri, 29 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4669
palomino4Windows Server 2022 Datacenterx644.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" 4404
merida1macOS 12.7.1 Montereyx86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4427
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 394/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVRanger 1.18.1  (landing page)
Ludwig Geistlinger
Snapshot Date: 2024-03-27 14:05:05 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/CNVRanger
git_branch: RELEASE_3_18
git_last_commit: bccc306
git_last_commit_date: 2024-02-24 16:54:29 -0400 (Sat, 24 Feb 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.1 Ventura / arm64see weekly results here

BUILD results for CNVRanger on nebbiolo2


To the developers/maintainers of the CNVRanger package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNVRanger.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CNVRanger
Version: 1.18.1
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CNVRanger
StartedAt: 2024-03-27 16:33:51 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 16:35:09 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 78.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CNVRanger
###
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* checking for file ‘CNVRanger/DESCRIPTION’ ... OK
* preparing ‘CNVRanger’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CNVRanger.Rmd’ using rmarkdown

Quitting from lines 411-415 [getBtGenes] (CNVRanger.Rmd)
Error: processing vignette 'CNVRanger.Rmd' failed with diagnostics:
failed to connect
  reason: Scanner error: mapping values are not allowed in this context at line 3, column 13
  Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘CNVRanger.Rmd’

SUMMARY: processing the following file failed:
  ‘CNVRanger.Rmd’

Error: Vignette re-building failed.
Execution halted