############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CATALYST ### ############################################################################## ############################################################################## * checking for file ‘CATALYST/DESCRIPTION’ ... OK * preparing ‘CATALYST’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘differential.Rmd’ using rmarkdown 2024-03-01 17:42:44.268 R[91481:898974946] XType: com.apple.fonts is not accessible. 2024-03-01 17:42:44.269 R[91481:898974946] XType: XTFontStaticRegistry is enabled. --- finished re-building ‘differential.Rmd’ --- re-building ‘preprocessing.Rmd’ using rmarkdown Quitting from lines 516-545 [sce2fcs-gating] (preprocessing.Rmd) Error: processing vignette 'preprocessing.Rmd' failed with diagnostics: attempt to apply non-function --- failed re-building ‘preprocessing.Rmd’ SUMMARY: processing the following file failed: ‘preprocessing.Rmd’ Error: Vignette re-building failed. Execution halted