############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL BiocSingular ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’ * installing *source* package ‘BiocSingular’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 10.3.1’ using C++17 g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/beachmat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/beachmat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c compute_scale.cpp -o compute_scale.o In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/beachmat/include/tatami/tatami.hpp:34, from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/beachmat/include/tatami_r/UnknownMatrix.hpp:5, from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/beachmat/include/tatami_r/tatami_r.hpp:4, from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/beachmat/include/Rtatami.h:8, from compute_scale.cpp:1: /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/beachmat/include/tatami/stats/variances.hpp: In instantiation of ‘std::pair<_FIter, _FIter> tatami::stats::variances::compute_direct(const tatami::SparseRange&, size_t) [with Output_ = double; Value_ = double; Index_ = int; size_t = long unsigned int]’: compute_scale.cpp:111:85: required from here /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/beachmat/include/tatami/stats/variances.hpp:90:29: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 90 | std::pair compute_direct(const SparseRange& range, size_t n) { | ^~~~~~~~~~~~~~ g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -L/usr/local/lib -o BiocSingular.so RcppExports.o compute_scale.o -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -lR installing to /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-BiocSingular/00new/BiocSingular/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocSingular)