############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL BioQC ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’ * installing *source* package ‘BioQC’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 10.3.1’ using C++ compiler: ‘g++ (GCC) 10.3.1’ gcc -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG `/home/biocbuild/R/R-beta-2024-04-15_r86425/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I/usr/local/include -fPIC -g -O2 -Wall -c gini.c -o gini.o gcc -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG `/home/biocbuild/R/R-beta-2024-04-15_r86425/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I/usr/local/include -fPIC -g -O2 -Wall -c init.c -o init.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG `/home/biocbuild/R/R-beta-2024-04-15_r86425/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I/usr/local/include -fPIC -g -O2 -Wall -c read_gmt.cpp -o read_gmt.o gcc -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG `/home/biocbuild/R/R-beta-2024-04-15_r86425/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I/usr/local/include -fPIC -g -O2 -Wall -c stat_rank.c -o stat_rank.o gcc -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG `/home/biocbuild/R/R-beta-2024-04-15_r86425/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I/usr/local/include -fPIC -g -O2 -Wall -c wmw_test.c -o wmw_test.o wmw_test.c: In function ‘wmw_test_list’: wmw_test.c:118: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 118 | #pragma omp parallel for | wmw_test.c: In function ‘wmw_test’: wmw_test.c:168: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 168 | #pragma omp parallel for | wmw_test.c: In function ‘signed_wmw_test_list’: wmw_test.c:201: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 201 | #pragma omp parallel for | wmw_test.c: In function ‘signed_wmw_test’: wmw_test.c:270: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 270 | #pragma omp parallel for | g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -L/usr/local/lib -o BioQC.so gini.o init.o read_gmt.o stat_rank.o wmw_test.o -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -lR installing to /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-BioQC/00new/BioQC/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BioQC)