Back to Multiple platform build/check report for BioC 3.16:   simplified   long
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This page was generated on 2023-03-22 11:05:58 -0400 (Wed, 22 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4271
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4214
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4259
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for BioMM on lconway


To the developers/maintainers of the BioMM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioMM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 192/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioMM 1.14.0  (landing page)
Junfang Chen
Snapshot Date: 2023-03-20 14:00:04 -0400 (Mon, 20 Mar 2023)
git_url: https://git.bioconductor.org/packages/BioMM
git_branch: RELEASE_3_16
git_last_commit: 5ba232e
git_last_commit_date: 2022-11-01 11:19:15 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.5.1 Monterey / x86_64  OK    ERROR  skippedskipped

Summary

Package: BioMM
Version: 1.14.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BioMM
StartedAt: 2023-03-20 16:10:07 -0400 (Mon, 20 Mar 2023)
EndedAt: 2023-03-20 16:12:11 -0400 (Mon, 20 Mar 2023)
EllapsedTime: 124.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BioMM
###
##############################################################################
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* checking for file ‘BioMM/DESCRIPTION’ ... OK
* preparing ‘BioMM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BioMMtutorial.Rmd’ using rmarkdown
Quitting from lines 307-314 (BioMMtutorial.Rmd) 
Error: processing vignette 'BioMMtutorial.Rmd' failed with diagnostics:
BiocParallel errors
  9 remote errors, element index: 1, 7, 13, 19, 25, 31, ...
  43 unevaluated and other errors
  first remote error:
Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, : 'row.names' should specify one of the variables

--- failed re-building ‘BioMMtutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘BioMMtutorial.Rmd’

Error: Vignette re-building failed.
Execution halted