############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r BUScorrect -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BUScorrect ### ############################################################################## ############################################################################## * checking for file 'BUScorrect/DESCRIPTION' ... OK * preparing 'BUScorrect': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to process help pages * saving partial Rd database * creating vignettes ... ERROR --- re-building 'BUScorrect_user_guide.Rnw' using knitr !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "BUScorrect_user_guide.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'BUScorrect_user_guide.Rnw' failed with diagnostics: running 'texi2dvi' on 'BUScorrect_user_guide.tex' failed LaTeX errors: ettes/BUScorrect_user_guide.tex:81: Package xcolor Error: Undefined color `fgco lor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:145: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:260: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:289: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:319: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:342: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:389: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:404: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:438: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:458: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:477: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:494: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:519: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. ettes/BUScorrect_user_guide.tex:532: Package xcolor Error: Undefined color `fgc olor'. See the xcolor package documentation for explanation. Type H for immediate help. --- failed re-building 'BUScorrect_user_guide.Rnw' SUMMARY: processing the following file failed: 'BUScorrect_user_guide.Rnw' Error: Vignette re-building failed. Execution halted