############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r AnnotationHub -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data AnnotationHub ### ############################################################################## ############################################################################## * checking for file 'AnnotationHub/DESCRIPTION' ... OK * preparing 'AnnotationHub': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'AnnotationHub-HOWTO.Rmd' using rmarkdown Quitting from lines 282-283 [unnamed-chunk-19] (AnnotationHub-HOWTO.Rmd) Error: processing vignette 'AnnotationHub-HOWTO.Rmd' failed with diagnostics: failed to load resource name: AH14150 title: hg19ToHg38.over.chain.gz reason: expected 11 elements in header, got 1, on line 8 --- failed re-building 'AnnotationHub-HOWTO.Rmd' --- re-building 'AnnotationHub.Rmd' using rmarkdown --- finished re-building 'AnnotationHub.Rmd' --- re-building 'TroubleshootingTheHubs.Rmd' using rmarkdown --- finished re-building 'TroubleshootingTheHubs.Rmd' SUMMARY: processing the following file failed: 'AnnotationHub-HOWTO.Rmd' Error: Vignette re-building failed. Execution halted