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### Running command:
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###   E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:AlpsNMR.install-out.txt --library=E:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings AlpsNMR_4.6.0.tar.gz
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* using log directory 'E:/biocbuild/bbs-3.19-bioc/meat/AlpsNMR.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'AlpsNMR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AlpsNMR' version '4.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AlpsNMR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                               user system elapsed
SummarizedExperiment_to_nmr_data_1r            7.20   0.25   11.12
nmr_pca_outliers_robust                        6.48   0.15   10.28
plsda_auroc_vip_compare                        3.35   0.01   15.63
Peak_detection                                 2.34   0.23   25.39
permutation_test_plot                          2.23   0.05   13.91
nmr_meta_add                                   2.14   0.11    9.53
permutation_test_model                         2.19   0.01   14.09
bp_VIP_analysis                                2.09   0.05   12.12
nmr_interpolate_1D                             1.93   0.03    9.87
nmr_pca_build_model                            1.83   0.05    9.34
nmr_read_samples                               1.82   0.00    9.19
validate_nmr_dataset                           1.73   0.05    8.77
plot_plsda_multimodel                          1.52   0.03    8.14
models_stability_plot_plsda                    1.50   0.02    8.25
nmr_data_analysis                              1.48   0.00    8.21
bp_kfold_VIP_analysis                          1.44   0.00    8.44
nmr_dataset_peak_table_to_SummarizedExperiment 1.36   0.06    5.20
plot_plsda_samples                             1.39   0.02    7.70
AlpsNMR-package                                1.32   0.06    5.19
SummarizedExperiment_to_nmr_dataset_peak_table 1.33   0.01    5.13
nmr_data_1r_to_SummarizedExperiment            1.25   0.05    5.23
new_nmr_dataset_peak_table                     1.01   0.01    5.08
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK