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This page was generated on 2021-10-13 15:05:44 -0400 (Wed, 13 Oct 2021).

BUILD BIN results for ADaCGH2 on machv2

To the developers/maintainers of the ADaCGH2 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ADaCGH2.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 15/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ADaCGH2 2.32.0  (landing page)
Ramon Diaz-Uriarte
Snapshot Date: 2021-10-12 04:50:13 -0400 (Tue, 12 Oct 2021)
git_url: https://git.bioconductor.org/packages/ADaCGH2
git_branch: RELEASE_3_13
git_last_commit: 43bdeb8
git_last_commit_date: 2021-05-19 11:46:43 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ADaCGH2
Version: 2.32.0
Command: rm -rf ADaCGH2.buildbin-libdir && mkdir ADaCGH2.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ADaCGH2_2.32.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ADaCGH2.buildbin-libdir
StartedAt: 2021-10-13 01:18:59 -0400 (Wed, 13 Oct 2021)
EndedAt: 2021-10-13 01:19:49 -0400 (Wed, 13 Oct 2021)
EllapsedTime: 50.1 seconds
RetCode: 0
Status:   OK  
PackageFile: ADaCGH2_2.32.0.tgz
PackageFileSize: 1.153 MiB

Command output

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###
### Running command:
###
###   rm -rf ADaCGH2.buildbin-libdir && mkdir ADaCGH2.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ADaCGH2_2.32.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ADaCGH2.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ADaCGH2.buildbin-libdir ADaCGH2_2.32.0.tar.gz'
>>>>>>> 

* installing *source* package ‘ADaCGH2’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c r_haarseg.c -o r_haarseg.o
r_haarseg.c:65:12: warning: unused variable 'totalNorm' [-Wunused-variable]
    double totalNorm;
           ^
r_haarseg.c:152:8: warning: '/*' within block comment [-Wcomment]
                                         }/* for j */
                                          ^
r_haarseg.c:176:8: warning: '/*' within block comment [-Wcomment]
                                         }/* for j */
                                          ^
r_haarseg.c:128:9: warning: unused variable 'j' [-Wunused-variable]
         int k,j;
               ^
4 warnings generated.
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ADaCGH2.so init.o r_haarseg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/ADaCGH2.buildbin-libdir/00LOCK-ADaCGH2/00new/ADaCGH2/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ADaCGH2)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ADaCGH2.buildbin-libdir/ADaCGH2/libs/ADaCGH2.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/ADaCGH2.so"