Workflows build report for BioC 3.18 - BUILD results for maEndToEnd on palomino4

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This page was generated on 2023-09-22 14:00:11 -0400 (Fri, 22 Sep 2023).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.2 LTS)	x86_64	4.3.1 (2023-06-16) -- "Beagle Scouts"	4659
palomino4	Windows Server 2022 Datacenter	x64	4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"	4394
lconway	macOS 12.6.5 Monterey	x86_64	4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts"	4408
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

maEndToEnd 2.21.2 (landing page)
Stefanie Reisenauer

Snapshot Date: 2023-09-22 10:45:01 -0400 (Fri, 22 Sep 2023)

git_url: https://git.bioconductor.org/packages/maEndToEnd

git_branch: devel

git_last_commit: 707a2ab

git_last_commit_date: 2023-09-12 06:53:44 -0400 (Tue, 12 Sep 2023)

nebbiolo2

Linux (Ubuntu 22.04.2 LTS) / x86_64

palomino4

Windows Server 2022 Datacenter / x64

ERROR

lconway

macOS 12.6.5 Monterey / x86_64

BUILD results for maEndToEnd on palomino4

To the developers/maintainers of the maEndToEnd package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: maEndToEnd

Version: 2.21.2

Command: chmod a+r maEndToEnd -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maEndToEnd

StartedAt: 2023-09-22 11:06:15 -0400 (Fri, 22 Sep 2023)

EndedAt: 2023-09-22 12:08:21 -0400 (Fri, 22 Sep 2023)

EllapsedTime: 3725.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r maEndToEnd -R && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maEndToEnd
###
##############################################################################
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* checking for file 'maEndToEnd/DESCRIPTION' ... OK
* preparing 'maEndToEnd':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'MA-Workflow.Rmd' using rmarkdown
trying URL 'https://ftp.ebi.ac.uk/biostudies/nfs/E-MTAB-/967/E-MTAB-2967/Files/E-MTAB-2967.sdrf.txt'
Content type 'text/plain; charset=UTF-8' length 22516 bytes (21 KB)
==================================================
downloaded 21 KB