Back to Workflows build report for BioC 3.17

This page was generated on 2023-01-24 14:00:13 -0500 (Tue, 24 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" 4464
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-01-10 r83596 ucrt) -- "Unsuffered Consequences" 4244
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" 4268
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for TCGAWorkflow on nebbiolo1


To the developers/maintainers of the TCGAWorkflow package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 28/29HostnameOS / ArchINSTALLBUILD
TCGAWorkflow 1.23.2  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2023-01-24 07:45:01 -0500 (Tue, 24 Jan 2023)
git_url: https://git.bioconductor.org/packages/TCGAWorkflow
git_branch: master
git_last_commit: f136748
git_last_commit_date: 2023-01-11 16:04:49 -0500 (Wed, 11 Jan 2023)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK  NO, package depends on 'ELMER' which is not available
palomino3Windows Server 2022 Datacenter / x64  OK    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK  

Summary

Package: TCGAWorkflow
Version: 1.23.2
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL TCGAWorkflow
StartedAt: 2023-01-24 08:00:13 -0500 (Tue, 24 Jan 2023)
EndedAt: 2023-01-24 08:01:15 -0500 (Tue, 24 Jan 2023)
EllapsedTime: 61.9 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL TCGAWorkflow
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘TCGAWorkflow’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** testing if installed package keeps a record of temporary installation path
* DONE (TCGAWorkflow)