Back to Workflows build report for BioC 3.19

This page was generated on 2024-03-26 14:00:10 -0400 (Tue, 26 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4696
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4434
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4459
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 14/30HostnameOS / ArchINSTALLBUILD
GeoMxWorkflows 1.9.0  (landing page)
Maddy Griswold
Snapshot Date: 2024-03-26 07:45:01 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/GeoMxWorkflows
git_branch: devel
git_last_commit: 1271021
git_last_commit_date: 2023-10-24 08:47:47 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  

BUILD results for GeoMxWorkflows on nebbiolo1


To the developers/maintainers of the GeoMxWorkflows package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: GeoMxWorkflows
Version: 1.9.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GeoMxWorkflows
StartedAt: 2024-03-26 08:02:40 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 08:14:51 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 731.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GeoMxWorkflows
###
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* checking for file ‘GeoMxWorkflows/DESCRIPTION’ ... OK
* preparing ‘GeoMxWorkflows’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GeomxTools_RNA-NGS_Analysis.Rmd’ using rmarkdown

Quitting from lines 1011-1050 [deNativeComplex] (GeomxTools_RNA-NGS_Analysis.Rmd)
Error: processing vignette 'GeomxTools_RNA-NGS_Analysis.Rmd' failed with diagnostics:
error reading from connection
--- failed re-building ‘GeomxTools_RNA-NGS_Analysis.Rmd’

SUMMARY: processing the following file failed:
  ‘GeomxTools_RNA-NGS_Analysis.Rmd’

Error: Vignette re-building failed.
Execution halted