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This page was generated on 2024-03-26 14:51:27 -0400 (Tue, 26 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4698
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 277/425HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.15.0  (landing page)
Hristo Inouzhe
Snapshot Date: 2024-03-26 07:30:03 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/optimalFlowData
git_branch: devel
git_last_commit: a76d9df
git_last_commit_date: 2023-10-24 09:20:58 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

CHECK results for optimalFlowData on nebbiolo1


To the developers/maintainers of the optimalFlowData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: optimalFlowData
Version: 1.15.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings optimalFlowData_1.15.0.tar.gz
StartedAt: 2024-03-26 12:04:06 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 12:05:07 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 61.0 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: optimalFlowData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings optimalFlowData_1.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/optimalFlowData.Rcheck’
* using R Under development (unstable) (2024-03-18 r86148)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 97.4Mb
  sub-directories of 1Mb or more:
    data  97.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 97.2 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.19-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.


Installation output

optimalFlowData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL optimalFlowData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0350.0070.044
Cytometry100.0300.0010.030
Cytometry110.0190.0120.031
Cytometry120.0270.0040.031
Cytometry130.0310.0000.031
Cytometry140.0310.0120.043
Cytometry150.0100.0070.018
Cytometry160.0180.0010.017
Cytometry170.0620.0110.073
Cytometry180.0540.0090.062
Cytometry190.0260.0030.029
Cytometry20.0590.0040.063
Cytometry200.0440.0040.048
Cytometry210.0570.0050.061
Cytometry220.0230.0040.027
Cytometry230.0180.0150.034
Cytometry240.0280.0040.033
Cytometry250.0240.0080.032
Cytometry260.0200.0080.028
Cytometry270.0730.0080.081
Cytometry280.1020.0200.122
Cytometry290.0700.0070.077
Cytometry30.0150.0010.015
Cytometry300.0510.0040.055
Cytometry310.0540.0040.058
Cytometry320.0560.0040.060
Cytometry330.0560.0040.059
Cytometry340.0710.0040.075
Cytometry350.0520.0000.052
Cytometry360.0140.0000.014
Cytometry370.0110.0030.015
Cytometry380.0140.0010.014
Cytometry390.0110.0040.015
Cytometry40.0140.0000.014
Cytometry400.0320.0040.036
Cytometry50.0110.0040.015
Cytometry60.0150.0000.015
Cytometry70.0170.0000.017
Cytometry80.0140.0000.014
Cytometry90.0250.0000.025
buildDatabase0.5250.0240.549
cytometry.diagnosis0.0000.0020.002
noise.types0.0010.0020.001