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BUILD report for mtbls2 on malbec2

This page was generated on 2020-11-23 15:58:33 -0500 (Mon, 23 Nov 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE mtbls2 PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 240/382HostnameOS / ArchINSTALLBUILDCHECK
mtbls2 1.21.0
Steffen Neumann
Snapshot Date: 2020-11-23 09:00:10 -0500 (Mon, 23 Nov 2020)
URL: https://git.bioconductor.org/packages/mtbls2
Branch: master
Last Commit: cc8ec19
Last Changed Date: 2020-10-27 10:14:13 -0500 (Tue, 27 Oct 2020)
malbec2 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK [ ERROR ] skipped 
riesling1 Windows Server 2019 Standard / x64  OK  OK  OK 

Summary

Package: mtbls2
Version: 1.21.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data mtbls2
StartedAt: 2020-11-23 11:08:23 -0500 (Mon, 23 Nov 2020)
EndedAt: 2020-11-23 11:20:14 -0500 (Mon, 23 Nov 2020)
EllapsedTime: 711.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data mtbls2
###
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* checking for file ‘mtbls2/DESCRIPTION’ ... OK
* preparing ‘mtbls2’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MTBLS2-xcms3.Rmd’ using rmarkdown
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: Rcpp
Loading required package: biocViews
Loading required package: affy
Loading required package: BiocParallel
Loading required package: MSnbase
Loading required package: mzR
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid

Loading required package: ProtGenerics

Attaching package: 'ProtGenerics'

The following objects are masked from 'package:affy':

    intensity, intensity<-

The following object is masked from 'package:stats':

    smooth


This is MSnbase version 2.17.2 
  Visit https://lgatto.github.io/MSnbase/ to get started.


Attaching package: 'MSnbase'

The following object is masked from 'package:affy':

    plotDensity

The following object is masked from 'package:base':

    trimws


This is xcms version 3.13.0 


Attaching package: 'xcms'

The following object is masked from 'package:stats':

    sigma


Attaching package: 'pcaMethods'

The following object is masked from 'package:stats':

    loadings

Quitting from lines 189-228 (MTBLS2-xcms3.Rmd) 
Error: processing vignette 'MTBLS2-xcms3.Rmd' failed with diagnostics:
could not find function "xcmsPapply"
--- failed re-building ‘MTBLS2-xcms3.Rmd’

--- re-building ‘MTBLS2.Rmd’ using rmarkdown
Quitting from lines 163-192 (MTBLS2.Rmd) 
Error: processing vignette 'MTBLS2.Rmd' failed with diagnostics:
could not find function "xcmsPapply"
--- failed re-building ‘MTBLS2.Rmd’

SUMMARY: processing the following files failed:
  ‘MTBLS2-xcms3.Rmd’ ‘MTBLS2.Rmd’

Error: Vignette re-building failed.
Execution halted