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This page was generated on 2024-03-26 14:51:27 -0400 (Tue, 26 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4698
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 242/425HostnameOS / ArchINSTALLBUILDCHECK
miRNATarget 1.41.0  (landing page)
Y-h. Taguchi
Snapshot Date: 2024-03-26 07:30:03 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/miRNATarget
git_branch: devel
git_last_commit: d595841
git_last_commit_date: 2023-10-24 08:58:15 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

CHECK results for miRNATarget on nebbiolo1


To the developers/maintainers of the miRNATarget package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: miRNATarget
Version: 1.41.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings miRNATarget_1.41.0.tar.gz
StartedAt: 2024-03-26 11:57:44 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 11:59:06 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 82.6 seconds
RetCode: 0
Status:   OK  
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings miRNATarget_1.41.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/miRNATarget.Rcheck’
* using R Under development (unstable) (2024-03-18 r86148)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.41.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 54.6Mb
  sub-directories of 1Mb or more:
    data  54.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.


Installation output

miRNATarget.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL miRNATarget
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘miRNATarget’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.0110.0030.014
HS_refseq_to_affy_hc_g1100.0040.0000.004
HS_refseq_to_affy_hg_focus0.0170.0000.017
HS_refseq_to_affy_hg_u133_plus_20.0580.0000.057
HS_refseq_to_affy_hg_u133a0.0350.0000.035
HS_refseq_to_affy_hg_u133a_20.0340.0000.034
HS_refseq_to_affy_hg_u133b0.0130.0030.018
HS_refseq_to_affy_hg_u95a0.0230.0000.023
HS_refseq_to_affy_hg_u95av20.0220.0000.021
HS_refseq_to_affy_hg_u95b0.0140.0000.013
HS_refseq_to_affy_hg_u95c0.010.000.01
HS_refseq_to_affy_hg_u95d0.0060.0000.006
HS_refseq_to_affy_hg_u95e0.0110.0000.011
HS_refseq_to_affy_huex_1_0_st_v20.7470.0350.783
HS_refseq_to_affy_hugene_1_0_st_v10.110.000.11
HS_refseq_to_affy_hugenefl0.0090.0030.012
HS_refseq_to_affy_u133_x3p0.0640.0000.063
HS_refseq_to_agilent_cgh_44b0.0120.0000.012
HS_refseq_to_agilent_wholegenome0.0680.0000.067
HS_refseq_to_canonical_transcript_stable_id0.0640.0000.063
HS_refseq_to_ccds0.0350.0000.034
HS_refseq_to_codelink0.0350.0000.035
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0010.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.001
HS_refseq_to_embl0.6540.0070.663
HS_refseq_to_ensembl_exon_id0.0010.0010.002
HS_refseq_to_ensembl_gene_id0.1300.0000.131
HS_refseq_to_ensembl_peptide_id0.0410.0000.042
HS_refseq_to_ensembl_transcript_id0.0530.0000.054
HS_refseq_to_entrezgene0.0490.0000.050
HS_refseq_to_hgnc_id0.0430.0040.046
HS_refseq_to_hgnc_symbol0.1050.0000.105
HS_refseq_to_hgnc_transcript_name0.0440.0000.045
HS_refseq_to_illumina_humanht_120.0460.0000.046
HS_refseq_to_illumina_humanwg_6_v10.0380.0040.042
HS_refseq_to_illumina_humanwg_6_v20.0320.0040.035
HS_refseq_to_illumina_humanwg_6_v30.0420.0000.043
HS_refseq_to_interpro0.1080.0040.113
HS_refseq_to_ipi0.0980.0080.106
HS_refseq_to_merops0.0040.0000.004
HS_refseq_to_pdb0.0790.0040.083
HS_refseq_to_pfam0.0600.0040.063
HS_refseq_to_phalanx_onearray0.0340.0030.037
HS_refseq_to_protein_id1.1040.0121.116
HS_refseq_to_refseq_dna0.0560.0000.056
HS_refseq_to_refseq_genomic0.0000.0010.001
HS_refseq_to_refseq_peptide0.0870.0030.090
HS_refseq_to_rfam0.0020.0000.003
HS_refseq_to_rfam_gene_name0.0010.0000.001
HS_refseq_to_rfam_transcript_name0.0010.0000.001
HS_refseq_to_smart0.0330.0000.034
HS_refseq_to_tigrfam0.0050.0000.005
HS_refseq_to_ucsc0.0460.0000.046
HS_refseq_to_unigene0.060.000.06
HS_refseq_to_uniprot_genename0.0370.0030.041
HS_refseq_to_uniprot_genename_transcript_name0.0020.0010.001
HS_refseq_to_uniprot_sptrembl0.0010.0000.001
HS_refseq_to_uniprot_swissprot0.0010.0000.001
HS_refseq_to_uniprot_swissprot_accession0.0010.0000.001
HS_refseq_to_wikigene_id0.0000.0010.002
HS_refseq_to_wikigene_name0.0430.0030.045
MM_conv_id0.0030.0000.002
MM_refseq_to_affy_mg_u74a0.0160.0000.016
MM_refseq_to_affy_mg_u74av20.0130.0000.014
MM_refseq_to_affy_mg_u74b0.0120.0000.012
MM_refseq_to_affy_mg_u74bv20.0120.0000.012
MM_refseq_to_affy_mg_u74c0.0040.0000.005
MM_refseq_to_affy_mg_u74cv20.0060.0000.005
MM_refseq_to_affy_moe430a0.0310.0000.031
MM_refseq_to_affy_moe430b0.0100.0040.014
MM_refseq_to_affy_moex_1_0_st_v10.3530.0150.369
MM_refseq_to_affy_mogene_1_0_st_v10.0370.0000.036
MM_refseq_to_affy_mouse430_20.0350.0040.039
MM_refseq_to_affy_mouse430a_20.0270.0000.028
MM_refseq_to_affy_mu11ksuba0.0120.0000.011
MM_refseq_to_affy_mu11ksubb0.0030.0040.007
MM_refseq_to_agilent_wholegenome0.0570.0000.056
MM_refseq_to_canonical_transcript_stable_id0.0550.0000.054
MM_refseq_to_ccds0.0240.0040.028
MM_refseq_to_codelink0.0260.0040.030
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0020.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.002
MM_refseq_to_embl0.2700.0120.283
MM_refseq_to_ensembl_exon_id0.0010.0000.001
MM_refseq_to_ensembl_gene_id0.1410.0000.141
MM_refseq_to_ensembl_peptide_id0.0320.0000.033
MM_refseq_to_ensembl_transcript_id0.0360.0000.036
MM_refseq_to_entrezgene0.0330.0000.032
MM_refseq_to_fantom0.0940.0000.093
MM_refseq_to_illumina_mousewg_6_v10.0470.0000.046
MM_refseq_to_illumina_mousewg_6_v20.0390.0080.046
MM_refseq_to_interpro0.0960.0000.096
MM_refseq_to_ipi0.0030.0000.003
MM_refseq_to_merops0.0030.0000.004
MM_refseq_to_mgi_id0.0360.0000.035
MM_refseq_to_mgi_symbol0.0370.0000.037
MM_refseq_to_mgi_transcript_name0.0390.0000.039
MM_refseq_to_pdb0.0050.0030.010
MM_refseq_to_pfam0.0550.0000.055
MM_refseq_to_phalanx_onearray0.0340.0000.033
MM_refseq_to_protein_id0.2590.0040.262
MM_refseq_to_refseq_dna0.0410.0040.044
MM_refseq_to_refseq_peptide0.0690.0030.073
MM_refseq_to_rfam0.0010.0010.001
MM_refseq_to_rfam_gene_name0.0010.0000.001
MM_refseq_to_rfam_transcript_name0.0010.0000.001
MM_refseq_to_smart0.0280.0000.028
MM_refseq_to_tigrfam0.0000.0040.004
MM_refseq_to_ucsc0.0390.0000.038
MM_refseq_to_unigene0.0460.0030.050
MM_refseq_to_uniprot_genename0.0340.0000.035
MM_refseq_to_uniprot_genename_transcript_name0.0010.0000.001
MM_refseq_to_uniprot_sptrembl0.0010.0000.001
MM_refseq_to_uniprot_swissprot0.0010.0000.002
MM_refseq_to_uniprot_swissprot_accession0.0020.0000.001
MM_refseq_to_wikigene_id0.0010.0000.001
MM_refseq_to_wikigene_name0.0320.0000.032
TBL21.3300.0791.410
TBL2_HS1.4480.2121.659
TBL2_MM0.8180.1090.926
conv_id0.0020.0000.002
id_conv0.0280.0000.028