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This page was generated on 2024-03-26 14:51:26 -0400 (Tue, 26 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4698
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 218/425HostnameOS / ArchINSTALLBUILDCHECK
mammaPrintData 1.39.0  (landing page)
Luigi Marchionni
Snapshot Date: 2024-03-26 07:30:03 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/mammaPrintData
git_branch: devel
git_last_commit: 6d96c9b
git_last_commit_date: 2023-10-24 09:05:49 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

CHECK results for mammaPrintData on nebbiolo1


To the developers/maintainers of the mammaPrintData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mammaPrintData
Version: 1.39.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:mammaPrintData.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings mammaPrintData_1.39.0.tar.gz
StartedAt: 2024-03-26 11:52:10 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 11:53:22 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 72.2 seconds
RetCode: 0
Status:   OK  
CheckDir: mammaPrintData.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:mammaPrintData.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings mammaPrintData_1.39.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/mammaPrintData.Rcheck’
* using R Under development (unstable) (2024-03-18 r86148)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘mammaPrintData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mammaPrintData’ version ‘1.39.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mammaPrintData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 224.1Mb
  sub-directories of 1Mb or more:
    data      10.5Mb
    extdata  213.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.19-data-experiment/meat/mammaPrintData.Rcheck/00check.log’
for details.


Installation output

mammaPrintData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL mammaPrintData
###
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##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘mammaPrintData’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
ℹ Using R 4.4.0 (lockfile was generated with R 4.2.3)
Warning message:
This project is configured to use Bioconductor 3.15, which is not compatible with R 4.4.0.
Use 'renv::init(bioconductor = "3.15")' to re-initialize this project with the appropriate Bioconductor release.
 
** installing vignettes
** testing if installed package can be loaded from temporary location
ℹ Using R 4.4.0 (lockfile was generated with R 4.2.3)
Warning message:
This project is configured to use Bioconductor 3.15, which is not compatible with R 4.4.0.
Use 'renv::init(bioconductor = "3.15")' to re-initialize this project with the appropriate Bioconductor release.
 
** testing if installed package can be loaded from final location
ℹ Using R 4.4.0 (lockfile was generated with R 4.2.3)
Warning message:
This project is configured to use Bioconductor 3.15, which is not compatible with R 4.4.0.
Use 'renv::init(bioconductor = "3.15")' to re-initialize this project with the appropriate Bioconductor release.
 
** testing if installed package keeps a record of temporary installation path
* DONE (mammaPrintData)

Tests output


Example timings

mammaPrintData.Rcheck/mammaPrintData-Ex.timings

nameusersystemelapsed
buyseRGcy30.8640.0800.943
buyseRGcy50.7250.0640.790
glasRGcy31.2850.0081.293
glasRGcy51.2750.0081.283
mammaPrintData2.0060.0412.048