Back to Build/check report for BioC 3.19 experimental data
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This page was generated on 2024-03-26 14:51:26 -0400 (Tue, 26 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4698
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 144/425HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.39.0  (landing page)
Matthew Young , Nadia Davidson
Snapshot Date: 2024-03-26 07:30:03 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/geneLenDataBase
git_branch: devel
git_last_commit: ab2d95a
git_last_commit_date: 2023-10-24 08:56:17 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    ERROR  

CHECK results for geneLenDataBase on nebbiolo1


To the developers/maintainers of the geneLenDataBase package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: geneLenDataBase
Version: 1.39.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings geneLenDataBase_1.39.0.tar.gz
StartedAt: 2024-03-26 11:40:21 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 11:49:02 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 521.2 seconds
RetCode: 1
Status:   ERROR  
CheckDir: geneLenDataBase.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings geneLenDataBase_1.39.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/geneLenDataBase.Rcheck’
* using R Under development (unstable) (2024-03-18 r86148)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.39.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.0Mb
  sub-directories of 1Mb or more:
    data  99.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Missing object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) unfactor.Rd:21: Lost braces
    21 | As factors are their own type, to remove factors we must convert each level into another type.  This is currently done using "typeless" behaviour: a factor is converted to a numeric vector if this can be done without inducing NAs, otherwise it is coerced using as.character. Currently supported types are: /code{factor}, /code{data.frame} and /code{list}.
       |                                                                                                                                                                                                                                                                                                                        ^
checkRd: (-1) unfactor.Rd:21: Lost braces
    21 | As factors are their own type, to remove factors we must convert each level into another type.  This is currently done using "typeless" behaviour: a factor is converted to a numeric vector if this can be done without inducing NAs, otherwise it is coerced using as.character. Currently supported types are: /code{factor}, /code{data.frame} and /code{list}.
       |                                                                                                                                                                                                                                                                                                                                       ^
checkRd: (-1) unfactor.Rd:21: Lost braces
    21 | As factors are their own type, to remove factors we must convert each level into another type.  This is currently done using "typeless" behaviour: a factor is converted to a numeric vector if this can be done without inducing NAs, otherwise it is coerced using as.character. Currently supported types are: /code{factor}, /code{data.frame} and /code{list}.
       |                                                                                                                                                                                                                                                                                                                                                             ^
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in Rd file 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in Rd file 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in ‘geneLenDataBase-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: supportedGeneIDs
> ### Title: Supported Gene IDs
> ### Aliases: supportedGeneIDs
> 
> ### ** Examples
> 
> supportedGeneIDs()
Error in load_package_gracefully("txdbmaker", "Starting with BioC 3.19, ",  : 
  Could not load package txdbmaker. Is it installed?

  Note that Starting with BioC 3.19, calling supportedUCSCtables()
  requires the txdbmaker package. Please install it with:

    BiocManager::install("txdbmaker")
Calls: supportedGeneIDs ... do.call -> do.call -> <Anonymous> -> load_package_gracefully
Execution halted
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 WARNING, 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0740.0040.078
anoCar1.genscan.LENGTH0.0470.0000.047
anoCar1.xenoRefGene.LENGTH0.8410.0040.845
anoGam1.ensGene.LENGTH0.0580.0000.058
anoGam1.geneid.LENGTH0.0440.0000.044
anoGam1.genscan.LENGTH0.0420.0000.042
apiMel1.genscan.LENGTH0.0330.0040.037
apiMel2.ensGene.LENGTH0.0860.0000.087
apiMel2.geneid.LENGTH0.0440.0040.048
apiMel2.genscan.LENGTH0.0990.0000.100
aplCal1.xenoRefGene.LENGTH1.0610.0841.146
bosTau2.geneSymbol.LENGTH0.0390.0000.039
bosTau2.geneid.LENGTH0.2180.0000.219
bosTau2.genscan.LENGTH0.0870.0040.091
bosTau2.refGene.LENGTH0.0300.0120.042
bosTau2.sgpGene.LENGTH0.0990.0040.103
bosTau3.ensGene.LENGTH0.0950.0080.103
bosTau3.geneSymbol.LENGTH0.0310.0040.035
bosTau3.geneid.LENGTH0.1170.0000.117
bosTau3.genscan.LENGTH0.0750.0000.075
bosTau3.refGene.LENGTH0.0340.0000.034
bosTau3.sgpGene.LENGTH0.090.000.09
bosTau4.ensGene.LENGTH0.0950.0000.096
bosTau4.geneSymbol.LENGTH0.0360.0000.036
bosTau4.genscan.LENGTH0.0690.0000.069
bosTau4.nscanGene.LENGTH0.030.000.03
bosTau4.refGene.LENGTH0.0340.0000.034
braFlo1.xenoRefGene.LENGTH0.4080.0120.420
caeJap1.xenoRefGene.LENGTH0.3690.0040.373
caePb1.xenoRefGene.LENGTH0.4880.0000.488
caePb2.xenoRefGene.LENGTH0.4300.0080.438
caeRem2.xenoRefGene.LENGTH0.3830.0000.383
caeRem3.xenoRefGene.LENGTH0.3600.0040.364
calJac1.genscan.LENGTH0.0890.0080.097
calJac1.nscanGene.LENGTH0.1190.0000.120
calJac1.xenoRefGene.LENGTH0.8260.0120.839
canFam1.ensGene.LENGTH0.2020.0040.206
canFam1.geneSymbol.LENGTH0.0060.0000.005
canFam1.genscan.LENGTH0.0630.0000.063
canFam1.nscanGene.LENGTH0.0610.0000.062
canFam1.refGene.LENGTH0.0050.0000.005
canFam1.xenoRefGene.LENGTH0.5490.0040.554
canFam2.ensGene.LENGTH0.0950.0000.096
canFam2.geneSymbol.LENGTH0.0060.0000.006
canFam2.genscan.LENGTH0.060.000.06
canFam2.nscanGene.LENGTH0.0660.0000.067
canFam2.refGene.LENGTH0.0050.0000.006
canFam2.xenoRefGene.LENGTH0.5540.0000.554
cavPor3.ensGene.LENGTH0.0850.0000.084
cavPor3.genscan.LENGTH0.1060.0040.111
cavPor3.nscanGene.LENGTH0.0610.0080.069
cavPor3.xenoRefGene.LENGTH0.6100.0120.622
cb1.xenoRefGene.LENGTH0.3670.0050.372
cb3.xenoRefGene.LENGTH0.3380.0020.339
ce2.geneSymbol.LENGTH0.0670.0040.071
ce2.geneid.LENGTH0.0570.0020.059
ce2.refGene.LENGTH0.0660.0020.068
ce4.geneSymbol.LENGTH0.070.000.07
ce4.refGene.LENGTH0.0630.0020.064
ce4.xenoRefGene.LENGTH0.0780.0020.080
ce6.ensGene.LENGTH0.0950.0020.095
ce6.geneSymbol.LENGTH0.0680.0020.070
ce6.refGene.LENGTH0.0630.0040.066
ce6.xenoRefGene.LENGTH0.0820.0000.083
ci1.geneSymbol.LENGTH0.0040.0020.006
ci1.refGene.LENGTH0.0030.0020.005
ci1.xenoRefGene.LENGTH0.1750.0000.175
ci2.ensGene.LENGTH0.0650.0000.065
ci2.geneSymbol.LENGTH0.0040.0020.006
ci2.refGene.LENGTH0.0030.0020.005
ci2.xenoRefGene.LENGTH0.2900.0040.295
danRer3.ensGene.LENGTH0.2450.0000.246
danRer3.geneSymbol.LENGTH0.0550.0000.054
danRer3.refGene.LENGTH0.0490.0000.049
danRer4.ensGene.LENGTH0.1140.0000.115
danRer4.geneSymbol.LENGTH0.0490.0030.052
danRer4.genscan.LENGTH0.0610.0000.061
danRer4.nscanGene.LENGTH0.0830.0040.087
danRer4.refGene.LENGTH0.0490.0000.049
danRer5.ensGene.LENGTH0.1080.0030.112
danRer5.geneSymbol.LENGTH0.0490.0000.049
danRer5.refGene.LENGTH0.0450.0000.045
danRer5.vegaGene.LENGTH0.0470.0000.048
danRer5.vegaPseudoGene.LENGTH0.0000.0030.003
danRer6.ensGene.LENGTH0.1020.0040.106
danRer6.geneSymbol.LENGTH0.0510.0000.051
danRer6.refGene.LENGTH0.0470.0000.047
danRer6.xenoRefGene.LENGTH0.4890.0000.489
dm1.geneSymbol.LENGTH0.0640.0000.064
dm1.genscan.LENGTH0.0250.0000.025
dm1.refGene.LENGTH0.0590.0000.060
dm2.geneSymbol.LENGTH0.0650.0000.065
dm2.geneid.LENGTH0.0330.0040.036
dm2.genscan.LENGTH0.0260.0000.025
dm2.nscanGene.LENGTH0.0500.0000.049
dm2.refGene.LENGTH0.0600.0000.059
dm3.geneSymbol.LENGTH0.0670.0030.070
dm3.nscanPasaGene.LENGTH0.0490.0040.054
dm3.refGene.LENGTH0.0680.0000.069
dp2.genscan.LENGTH0.0340.0000.035
dp2.xenoRefGene.LENGTH0.1950.0000.195
dp3.geneid.LENGTH0.0390.0000.039
dp3.genscan.LENGTH0.0260.0000.027
dp3.xenoRefGene.LENGTH0.1040.0040.108
droAna1.geneid.LENGTH0.0660.0030.069
droAna1.genscan.LENGTH0.0220.0000.022
droAna1.xenoRefGene.LENGTH0.1910.0000.191
droAna2.genscan.LENGTH0.050.000.05
droAna2.xenoRefGene.LENGTH0.2510.0040.255
droEre1.genscan.LENGTH0.0250.0040.030
droEre1.xenoRefGene.LENGTH0.2650.0000.265
droGri1.genscan.LENGTH0.0370.0040.041
droGri1.xenoRefGene.LENGTH0.2860.0120.299
droMoj1.geneid.LENGTH0.2260.0280.253
droMoj1.genscan.LENGTH0.0540.0000.055
droMoj1.xenoRefGene.LENGTH0.2100.0000.211
droMoj2.genscan.LENGTH0.0370.0000.037
droMoj2.xenoRefGene.LENGTH0.2590.0000.258
droPer1.genscan.LENGTH0.0410.0000.041
droPer1.xenoRefGene.LENGTH0.2570.0000.257
droSec1.genscan.LENGTH0.0260.0040.029
droSec1.xenoRefGene.LENGTH0.2580.0000.259
droSim1.geneid.LENGTH0.0420.0000.043
droSim1.genscan.LENGTH0.0230.0030.027
droSim1.xenoRefGene.LENGTH0.2170.0040.222
droVir1.geneid.LENGTH0.1050.0000.105
droVir1.genscan.LENGTH0.0440.0000.043
droVir1.xenoRefGene.LENGTH0.2320.0000.232
droVir2.genscan.LENGTH0.0320.0040.037
droVir2.xenoRefGene.LENGTH0.2590.0040.263
droYak1.geneid.LENGTH0.0450.0000.044
droYak1.genscan.LENGTH0.030.000.03
droYak1.xenoRefGene.LENGTH0.2110.0000.211
droYak2.genscan.LENGTH0.0230.0060.029
droYak2.xenoRefGene.LENGTH0.4580.0060.463
equCab1.geneSymbol.LENGTH0.0060.0000.005
equCab1.geneid.LENGTH0.0850.0000.084
equCab1.nscanGene.LENGTH0.0390.0020.040
equCab1.refGene.LENGTH0.0030.0020.005
equCab1.sgpGene.LENGTH0.0640.0080.071
equCab2.ensGene.LENGTH0.0920.0040.095
equCab2.geneSymbol.LENGTH0.0070.0000.007
equCab2.nscanGene.LENGTH0.0520.0000.052
equCab2.refGene.LENGTH0.0070.0000.006
equCab2.xenoRefGene.LENGTH0.5450.0080.554
felCat3.ensGene.LENGTH0.0980.0030.102
felCat3.geneSymbol.LENGTH0.0040.0000.004
felCat3.geneid.LENGTH0.5050.0040.510
felCat3.genscan.LENGTH0.9840.1001.084
felCat3.nscanGene.LENGTH0.0850.0020.086
felCat3.refGene.LENGTH0.0020.0020.003
felCat3.sgpGene.LENGTH0.1340.0000.133
felCat3.xenoRefGene.LENGTH0.9750.0000.974
fr1.ensGene.LENGTH0.0620.0080.070
fr1.genscan.LENGTH0.0550.0000.055
fr2.ensGene.LENGTH0.1170.0040.120
galGal2.ensGene.LENGTH0.0560.0000.056
galGal2.geneSymbol.LENGTH0.0160.0000.017
galGal2.geneid.LENGTH0.0380.0000.039
galGal2.genscan.LENGTH0.0460.0040.050
galGal2.refGene.LENGTH0.0160.0000.015
galGal2.sgpGene.LENGTH0.0390.0030.043
galGal3.ensGene.LENGTH0.0680.0040.072
galGal3.geneSymbol.LENGTH0.0120.0040.016
galGal3.genscan.LENGTH0.0470.0000.047
galGal3.nscanGene.LENGTH0.0710.0000.071
galGal3.refGene.LENGTH0.0140.0000.014
galGal3.xenoRefGene.LENGTH0.4480.0040.452
gasAcu1.ensGene.LENGTH0.0800.0120.092
gasAcu1.nscanGene.LENGTH0.0960.0000.096
hg16.acembly.LENGTH0.3500.0040.354
hg16.ensGene.LENGTH0.0740.0000.074
hg16.exoniphy.LENGTH0.2370.0120.248
hg16.geneSymbol.LENGTH0.1020.0040.106
hg16.geneid.LENGTH0.0490.0020.050
hg16.genscan.LENGTH0.0650.0020.067
hg16.knownGene.LENGTH0.1230.0000.124
hg16.refGene.LENGTH0.1050.0000.104
hg16.sgpGene.LENGTH0.060.000.06
hg17.acembly.LENGTH0.4530.0060.458
hg17.acescan.LENGTH0.0090.0020.012
hg17.ccdsGene.LENGTH0.0260.0000.026
hg17.ensGene.LENGTH0.1120.0000.112
hg17.exoniphy.LENGTH0.4200.0080.428
hg17.geneSymbol.LENGTH0.1090.0040.113
hg17.geneid.LENGTH0.0790.0040.083
hg17.genscan.LENGTH0.0600.0040.064
hg17.knownGene.LENGTH0.1120.0000.112
hg17.refGene.LENGTH0.1030.0000.103
hg17.sgpGene.LENGTH0.0740.0030.077
hg17.vegaGene.LENGTH0.0490.0020.050
hg17.vegaPseudoGene.LENGTH0.0190.0020.020
hg17.xenoRefGene.LENGTH0.4810.0000.481
hg18.acembly.LENGTH0.6500.0040.654
hg18.acescan.LENGTH0.010.000.01
hg18.ccdsGene.LENGTH0.0340.0000.034
hg18.ensGene.LENGTH0.1970.0000.197
hg18.exoniphy.LENGTH0.4390.0000.439
hg18.geneSymbol.LENGTH0.1040.0000.104
hg18.geneid.LENGTH0.0760.0000.076
hg18.genscan.LENGTH0.0670.0000.067
hg18.knownGene.LENGTH0.1470.0040.151
hg18.knownGeneOld3.LENGTH0.070.000.07
hg18.refGene.LENGTH0.0980.0000.098
hg18.sgpGene.LENGTH0.0760.0000.076
hg18.sibGene.LENGTH0.3450.0070.353
hg18.xenoRefGene.LENGTH0.3580.0000.358
hg19.ccdsGene.LENGTH0.0410.0000.041
hg19.ensGene.LENGTH0.3030.0000.303
hg19.exoniphy.LENGTH0.5410.0040.545
hg19.geneSymbol.LENGTH0.1020.0000.102
hg19.knownGene.LENGTH0.1690.0000.169
hg19.nscanGene.LENGTH0.1440.0030.147
hg19.refGene.LENGTH0.0990.0000.099
hg19.xenoRefGene.LENGTH0.3550.0000.355
loxAfr3.xenoRefGene.LENGTH0.7290.0080.737
mm7.ensGene.LENGTH0.110.000.11
mm7.geneSymbol.LENGTH0.0830.0040.087
mm7.geneid.LENGTH0.080.000.08
mm7.genscan.LENGTH0.0660.0000.066
mm7.knownGene.LENGTH0.0970.0000.097
mm7.refGene.LENGTH0.0800.0030.084
mm7.sgpGene.LENGTH0.0720.0000.072
mm7.xenoRefGene.LENGTH0.3160.0000.316
mm8.ccdsGene.LENGTH0.0220.0000.022
mm8.ensGene.LENGTH0.0790.0000.079
mm8.geneSymbol.LENGTH0.0860.0040.090
mm8.geneid.LENGTH0.0750.0000.075
mm8.genscan.LENGTH0.0580.0020.059
mm8.knownGene.LENGTH0.0880.0020.091
mm8.nscanGene.LENGTH0.0620.0000.062
mm8.refGene.LENGTH0.0860.0000.086
mm8.sgpGene.LENGTH0.0700.0040.074
mm8.sibGene.LENGTH0.4280.0080.436
mm8.xenoRefGene.LENGTH0.3500.0040.354
mm9.acembly.LENGTH0.3100.0000.311
mm9.ccdsGene.LENGTH0.030.000.03
mm9.ensGene.LENGTH0.1470.0020.149
mm9.exoniphy.LENGTH0.4290.0050.434
mm9.geneSymbol.LENGTH0.0890.0040.093
mm9.geneid.LENGTH0.0870.0000.087
mm9.genscan.LENGTH1.2020.1121.314
mm9.knownGene.LENGTH0.0960.0000.096
mm9.nscanGene.LENGTH0.0500.0030.054
mm9.refGene.LENGTH0.0800.0040.084
mm9.sgpGene.LENGTH0.0750.0040.079
mm9.xenoRefGene.LENGTH0.3070.0040.311
monDom1.genscan.LENGTH0.0580.0000.059
monDom4.ensGene.LENGTH0.0690.0000.069
monDom4.geneSymbol.LENGTH0.0000.0030.004
monDom4.genscan.LENGTH0.050.000.05
monDom4.nscanGene.LENGTH0.050.000.05
monDom4.refGene.LENGTH0.0030.0000.003
monDom4.xenoRefGene.LENGTH0.2970.0000.297
monDom5.ensGene.LENGTH0.0980.0000.098
monDom5.geneSymbol.LENGTH0.0030.0000.003
monDom5.genscan.LENGTH0.0520.0000.052
monDom5.nscanGene.LENGTH0.1060.0000.106
monDom5.refGene.LENGTH0.0030.0000.003
monDom5.xenoRefGene.LENGTH0.5440.0020.546
ornAna1.ensGene.LENGTH0.0910.0020.093
ornAna1.geneSymbol.LENGTH0.0020.0000.002
ornAna1.refGene.LENGTH0.0020.0000.002
ornAna1.xenoRefGene.LENGTH0.5340.0000.534
oryLat2.ensGene.LENGTH0.0770.0000.077
oryLat2.geneSymbol.LENGTH0.0040.0000.004
oryLat2.refGene.LENGTH0.0040.0000.004
oryLat2.xenoRefGene.LENGTH0.4570.0040.462
panTro1.ensGene.LENGTH0.0940.0040.098
panTro1.geneid.LENGTH0.0470.0000.047
panTro1.genscan.LENGTH0.060.000.06
panTro1.xenoRefGene.LENGTH0.1070.0000.107
panTro2.ensGene.LENGTH0.1070.0000.107
panTro2.geneSymbol.LENGTH0.0980.0000.097
panTro2.genscan.LENGTH0.0540.0040.059
panTro2.nscanGene.LENGTH0.0610.0000.061
panTro2.refGene.LENGTH0.0990.0000.099
panTro2.xenoRefGene.LENGTH0.4700.0030.475
petMar1.xenoRefGene.LENGTH0.2570.0000.257
ponAbe2.ensGene.LENGTH0.0780.0030.082
ponAbe2.geneSymbol.LENGTH0.0090.0040.013
ponAbe2.genscan.LENGTH0.0620.0000.062
ponAbe2.nscanGene.LENGTH0.0610.0000.061
ponAbe2.refGene.LENGTH0.0120.0000.012
ponAbe2.xenoRefGene.LENGTH0.5740.0060.579
priPac1.xenoRefGene.LENGTH0.3440.0020.346
rheMac2.ensGene.LENGTH0.1160.0040.119
rheMac2.geneSymbol.LENGTH0.0050.0000.005
rheMac2.geneid.LENGTH0.0710.0000.071
rheMac2.nscanGene.LENGTH0.0610.0000.061
rheMac2.refGene.LENGTH0.0050.0000.005
rheMac2.sgpGene.LENGTH0.0710.0000.071
rheMac2.xenoRefGene.LENGTH0.4400.0040.444
rn3.ensGene.LENGTH0.0970.0000.097
rn3.geneSymbol.LENGTH0.0520.0000.052
rn3.geneid.LENGTH0.0530.0000.052
rn3.genscan.LENGTH0.0600.0000.061
rn3.knownGene.LENGTH0.0190.0040.024
rn3.nscanGene.LENGTH0.0540.0040.058
rn3.refGene.LENGTH0.0490.0000.048
rn3.sgpGene.LENGTH0.0560.0000.056
rn3.xenoRefGene.LENGTH0.5050.0080.513
rn4.ensGene.LENGTH0.1290.0000.130
rn4.geneSymbol.LENGTH0.0480.0040.053
rn4.geneid.LENGTH0.0860.0000.087
rn4.genscan.LENGTH0.0590.0000.059
rn4.knownGene.LENGTH0.0240.0000.024
rn4.nscanGene.LENGTH0.0480.0050.052
rn4.refGene.LENGTH0.0450.0020.047
rn4.sgpGene.LENGTH0.0800.0000.081
rn4.xenoRefGene.LENGTH0.2980.0000.298
sacCer1.ensGene.LENGTH0.0180.0000.018
sacCer2.ensGene.LENGTH0.0130.0040.017
strPur1.geneSymbol.LENGTH0.0040.0000.005
strPur1.genscan.LENGTH0.0630.0000.063
strPur1.refGene.LENGTH0.0040.0000.004
strPur1.xenoRefGene.LENGTH0.4270.0040.431
strPur2.geneSymbol.LENGTH0.0010.0040.004
strPur2.genscan.LENGTH0.1000.0040.104
strPur2.refGene.LENGTH0.0000.0040.004
strPur2.xenoRefGene.LENGTH0.6120.0080.621