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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:curatedPCaData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings curatedPCaData_1.1.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/curatedPCaData.Rcheck’
* using R version 4.4.0 RC (2024-04-16 r86468)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘curatedPCaData/DESCRIPTION’ ... OK
* this is package ‘curatedPCaData’ version ‘1.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘curatedPCaData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                   user system elapsed
getPCaSummaryStudies            198.691  6.599 225.064
getPCaSummarySamples             26.877  0.716  30.116
getPCaSummaryTable               26.372  0.564  29.637
getPCaSummarySurv                25.693  0.808  28.855
curatedPCaDatasets_abida         17.739  1.556  20.771
curatedPCaDatasets_taylor        14.263  0.455  15.933
curatedPCaDatasets_tcga          14.255  0.380  15.843
getPCa                           13.803  0.332  15.328
curatedPCaDatasets_barbieri      12.690  0.428  14.279
curatedPCaDatasets_ren           12.263  0.296  13.776
curatedPCaDatasets_weiner        11.577  0.452  13.050
curatedPCaDatasets_kim           10.742  0.244  12.191
curatedPCaDatasets_friedrich     10.638  0.320  12.330
curatedPCaDatasets_kunderfranco  10.637  0.268  11.940
curatedPCaDatasets_sun           10.598  0.305  11.986
curatedPCaDatasets_wang          10.506  0.308  11.895
curatedPCaDatasets_icgcca        10.534  0.232  11.900
curatedPCaDatasets_igc           10.235  0.281  11.542
curatedPCaDatasets_wallace       10.055  0.243  11.353
curatedPCaDatasets_chandran       9.718  0.287  11.008
curatedPCaDatasets_true           8.952  0.268  10.184
curatedPCaDatasets_barwick        7.915  0.252   9.020
curatedPCaDatasets_baca           4.527  0.100   5.145
curatedPCaDatasets_hieronymus     3.474  0.076   6.437
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘native_tests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK