Back to Build/check report for BioC 3.19 experimental data
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2024-03-26 14:51:27 -0400 (Tue, 26 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4698
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 231/425HostnameOS / ArchINSTALLBUILDCHECK
MetaScope 1.3.9  (landing page)
Aubrey Odom
Snapshot Date: 2024-03-26 07:30:03 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/MetaScope
git_branch: devel
git_last_commit: 0e211b8
git_last_commit_date: 2024-03-08 10:54:55 -0400 (Fri, 08 Mar 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for MetaScope on nebbiolo1


To the developers/maintainers of the MetaScope package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MetaScope
Version: 1.3.9
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MetaScope
StartedAt: 2024-03-26 10:37:47 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 10:44:26 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 399.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MetaScope
###
##############################################################################
##############################################################################


* checking for file ‘MetaScope/DESCRIPTION’ ... OK
* preparing ‘MetaScope’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MetaScope_vignette.Rmd’ using rmarkdown
Building a SMALL index
Building a SMALL index
1500 reads; of these:
  1500 (100.00%) were unpaired; of these:
    480 (32.00%) aligned 0 times
    117 (7.80%) aligned exactly 1 time
    903 (60.20%) aligned >1 times
68.00% overall alignment rate
1020 reads; of these:
  1020 (100.00%) were unpaired; of these:
    991 (97.16%) aligned 0 times
    8 (0.78%) aligned exactly 1 time
    21 (2.06%) aligned >1 times
2.84% overall alignment rate

Quitting from lines 300-312 [identification] (MetaScope_vignette.Rmd)
Error: processing vignette 'MetaScope_vignette.Rmd' failed with diagnostics:
there is no package called 'qlcMatrix'
--- failed re-building ‘MetaScope_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘MetaScope_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted