Back to Build/check report for BioC 3.19 experimental data |
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This page was generated on 2024-03-26 14:51:27 -0400 (Tue, 26 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4698 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 231/425 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
MetaScope 1.3.9 (landing page) Aubrey Odom
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||
To the developers/maintainers of the MetaScope package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: MetaScope |
Version: 1.3.9 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MetaScope |
StartedAt: 2024-03-26 10:37:47 -0400 (Tue, 26 Mar 2024) |
EndedAt: 2024-03-26 10:44:26 -0400 (Tue, 26 Mar 2024) |
EllapsedTime: 399.1 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MetaScope ### ############################################################################## ############################################################################## * checking for file ‘MetaScope/DESCRIPTION’ ... OK * preparing ‘MetaScope’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MetaScope_vignette.Rmd’ using rmarkdown Building a SMALL index Building a SMALL index 1500 reads; of these: 1500 (100.00%) were unpaired; of these: 480 (32.00%) aligned 0 times 117 (7.80%) aligned exactly 1 time 903 (60.20%) aligned >1 times 68.00% overall alignment rate 1020 reads; of these: 1020 (100.00%) were unpaired; of these: 991 (97.16%) aligned 0 times 8 (0.78%) aligned exactly 1 time 21 (2.06%) aligned >1 times 2.84% overall alignment rate Quitting from lines 300-312 [identification] (MetaScope_vignette.Rmd) Error: processing vignette 'MetaScope_vignette.Rmd' failed with diagnostics: there is no package called 'qlcMatrix' --- failed re-building ‘MetaScope_vignette.Rmd’ SUMMARY: processing the following file failed: ‘MetaScope_vignette.Rmd’ Error: Vignette re-building failed. Execution halted