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This page was generated on 2024-03-26 14:51:26 -0400 (Tue, 26 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4698
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 208/425HostnameOS / ArchINSTALLBUILDCHECK
ListerEtAlBSseq 1.35.0  (landing page)
Mattia Furlan
Snapshot Date: 2024-03-26 07:30:03 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/ListerEtAlBSseq
git_branch: devel
git_last_commit: 6891d0b
git_last_commit_date: 2023-10-24 09:09:02 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

CHECK results for ListerEtAlBSseq on nebbiolo1


To the developers/maintainers of the ListerEtAlBSseq package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ListerEtAlBSseq
Version: 1.35.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:ListerEtAlBSseq.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings ListerEtAlBSseq_1.35.0.tar.gz
StartedAt: 2024-03-26 11:50:14 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 11:52:51 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 157.2 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: ListerEtAlBSseq.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:ListerEtAlBSseq.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings ListerEtAlBSseq_1.35.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/ListerEtAlBSseq.Rcheck’
* using R Under development (unstable) (2024-03-18 r86148)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘ListerEtAlBSseq/DESCRIPTION’ ... OK
* this is package ‘ListerEtAlBSseq’ version ‘1.35.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ListerEtAlBSseq’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 659.5Mb
  sub-directories of 1Mb or more:
    data       3.0Mb
    extdata  656.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘ListerEtAlBSseq.rnw’
Files named as vignettes but with no recognized vignette engine:
   ‘vignettes/ListerEtAlBSseq.rnw’
(Is a VignetteBuilder field missing?)
* checking examples ... OK
* checking package vignettes ... NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-data-experiment/meat/ListerEtAlBSseq.Rcheck/00check.log’
for details.


Installation output

ListerEtAlBSseq.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL ListerEtAlBSseq
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘ListerEtAlBSseq’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ListerEtAlBSseq)

Tests output


Example timings

ListerEtAlBSseq.Rcheck/ListerEtAlBSseq-Ex.timings

nameusersystemelapsed
H1.WGBS0.2220.0120.238
IMR90.WGBS0.1720.0070.184