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This page was generated on 2024-07-11 14:51 -0400 (Thu, 11 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4675
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 206/425HostnameOS / ArchINSTALLBUILDCHECK
KOdata 1.31.0  (landing page)
Shana White
Snapshot Date: 2024-07-11 07:30 -0400 (Thu, 11 Jul 2024)
git_url: https://git.bioconductor.org/packages/KOdata
git_branch: devel
git_last_commit: 36425c7
git_last_commit_date: 2024-04-30 10:48:05 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published


CHECK results for KOdata on nebbiolo2

To the developers/maintainers of the KOdata package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: KOdata
Version: 1.31.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:KOdata.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings KOdata_1.31.0.tar.gz
StartedAt: 2024-07-11 11:32:28 -0400 (Thu, 11 Jul 2024)
EndedAt: 2024-07-11 11:32:44 -0400 (Thu, 11 Jul 2024)
EllapsedTime: 16.6 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: KOdata.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:KOdata.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings KOdata_1.31.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/KOdata.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘KOdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KOdata’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KOdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 55.8Mb
  sub-directories of 1Mb or more:
    data  55.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
checkRd: (-1) KO_data.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KO_data.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gene_cell_info.Rd:9: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gene_cell_info.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gene_cell_info.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gene_cell_info.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gene_cell_info.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) gene_cell_info.Rd:14: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 55.7 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-data-experiment/meat/KOdata.Rcheck/00check.log’
for details.


Installation output

KOdata.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL KOdata
###
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘KOdata’ ...
** using staged installation
** data
*** moving datasets to lazyload DB
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KOdata)

Tests output


Example timings