Back to Build/check report for BioC 3.19 experimental data |
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This page was generated on 2024-03-26 14:51:26 -0400 (Tue, 26 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4698 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 96/425 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
DmelSGI 1.35.0 (landing page) Mike Smith
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
To the developers/maintainers of the DmelSGI package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: DmelSGI |
Version: 1.35.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:DmelSGI.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings DmelSGI_1.35.0.tar.gz |
StartedAt: 2024-03-26 11:29:40 -0400 (Tue, 26 Mar 2024) |
EndedAt: 2024-03-26 11:34:22 -0400 (Tue, 26 Mar 2024) |
EllapsedTime: 282.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DmelSGI.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:DmelSGI.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings DmelSGI_1.35.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-data-experiment/meat/DmelSGI.Rcheck’ * using R Under development (unstable) (2024-03-18 r86148) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘DmelSGI/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DmelSGI’ version ‘1.35.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DmelSGI’ can be installed ... OK * checking installed package size ... NOTE installed size is 138.6Mb sub-directories of 1Mb or more: data 137.5Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.19-data-experiment/meat/DmelSGI.Rcheck/00check.log’ for details.
DmelSGI.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL DmelSGI ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘DmelSGI’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DmelSGI)
DmelSGI.Rcheck/DmelSGI-Ex.timings
name | user | system | elapsed | |
ChromatinSet-package | 3.763 | 0.048 | 3.811 | |
DPiM | 0.011 | 0.004 | 0.015 | |
FBgn2anno | 0.301 | 0.031 | 0.334 | |
Features | 0.004 | 0.000 | 0.004 | |
Interactions | 1.917 | 0.052 | 1.969 | |
Intogen | 0.009 | 0.000 | 0.009 | |
RohnEtAl | 0.002 | 0.000 | 0.002 | |
SKDdata | 0.345 | 0.013 | 0.358 | |
SelectedClusters | 0.002 | 0.000 | 0.002 | |
SelectedClustersComplexes | 0.001 | 0.000 | 0.001 | |
TID2HUGO | 0.006 | 0.000 | 0.005 | |
applyDimensionReduction | 0.000 | 0.001 | 0.002 | |
callInteractions | 0.000 | 0.001 | 0.001 | |
datamatrix | 3.727 | 0.073 | 3.799 | |
estimatePairwiseInteractions | 0.002 | 0.000 | 0.002 | |
fitepistasis | 0.123 | 0.015 | 0.139 | |
getBaseDir | 0.001 | 0.000 | 0.001 | |
grid.spider | 0.000 | 0.001 | 0.002 | |
hrNames | 0.000 | 0.000 | 0.001 | |
learnCoComplexityFct | 0.001 | 0.001 | 0.001 | |
mainEffects | 0.061 | 0.007 | 0.069 | |
myHeatmap | 0.001 | 0.000 | 0.001 | |
mymedpolish | 0.002 | 0.000 | 0.001 | |
orderDim | 0.001 | 0.000 | 0.000 | |
orderSpiderAxis | 0.000 | 0.000 | 0.001 | |
pimatrix | 0.528 | 0.064 | 0.592 | |
plot2Phenotypes | 0.002 | 0.000 | 0.002 | |
plotHairballLabels | 0.000 | 0.000 | 0.001 | |
qualityControlFeature | 0.003 | 0.000 | 0.004 | |
qualityControlGene | 0.009 | 0.004 | 0.013 | |
selectByStability | 0.001 | 0.000 | 0.001 | |
stabilitySelection | 0.063 | 0.007 | 0.070 | |
subSampleForStabilitySelection | 0.060 | 0.003 | 0.065 | |
subSampleForStabilitySelectionFct | 0.001 | 0.000 | 0.001 | |
toMatrix | 0 | 0 | 0 | |
toRaster | 0.001 | 0.000 | 0.000 | |
trsf | 0.001 | 0.000 | 0.000 | |