Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-15 11:12:34 -0500 (Sat, 15 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4160
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4055
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3997
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4114
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for trigger on merida1


To the developers/maintainers of the trigger package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trigger.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1993/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trigger 1.41.0  (landing page)
John D. Storey
Snapshot Date: 2022-01-14 13:55:18 -0500 (Fri, 14 Jan 2022)
git_url: https://git.bioconductor.org/packages/trigger
git_branch: master
git_last_commit: dcf2dad
git_last_commit_date: 2021-10-26 12:01:26 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'sva' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: trigger
Version: 1.41.0
Command: rm -rf trigger.buildbin-libdir && mkdir trigger.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh trigger_1.41.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R trigger.buildbin-libdir
StartedAt: 2022-01-15 08:49:35 -0500 (Sat, 15 Jan 2022)
EndedAt: 2022-01-15 08:50:30 -0500 (Sat, 15 Jan 2022)
EllapsedTime: 55.6 seconds
RetCode: 0
Status:   OK  
PackageFile: trigger_1.41.0.tgz
PackageFileSize: 2.095 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf trigger.buildbin-libdir && mkdir trigger.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh trigger_1.41.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R trigger.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=trigger.buildbin-libdir trigger_1.41.0.tar.gz'
>>>>>>> 

* installing *source* package ‘trigger’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c trigger.c -o trigger.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o trigger.so trigger.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.15-bioc/meat/trigger.buildbin-libdir/00LOCK-trigger/00new/trigger/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (trigger)


>>>>>>> 
>>>>>>> FIXING LINKS FOR trigger.buildbin-libdir/trigger/libs/trigger.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "trigger.buildbin-libdir/trigger/libs/trigger.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "trigger.buildbin-libdir/trigger/libs/trigger.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "trigger.buildbin-libdir/trigger/libs/trigger.so"