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This page was generated on 2022-01-15 11:08:51 -0500 (Sat, 15 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4160
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4055
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3997
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4114
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for trena on riesling1


To the developers/maintainers of the trena package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trena.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1989/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trena 1.17.0  (landing page)
Paul Shannon
Snapshot Date: 2022-01-14 13:55:18 -0500 (Fri, 14 Jan 2022)
git_url: https://git.bioconductor.org/packages/trena
git_branch: master
git_last_commit: a24a89b
git_last_commit_date: 2021-10-26 12:35:29 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'MotifDb' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: trena
Version: 1.17.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL trena
StartedAt: 2022-01-14 16:11:16 -0500 (Fri, 14 Jan 2022)
EndedAt: 2022-01-14 16:12:23 -0500 (Fri, 14 Jan 2022)
EllapsedTime: 66.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL trena
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'trena' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
See system.file("LICENSE", package="MotifDb") for use restrictions.
** help
*** installing help indices
  converting help for package 'trena'
    finding HTML links ... done
    BayesSpikeSolver-class                  html  
    BayesSpikeSolver                        html  
    BicorSolver-class                       html  
    BicorSolver                             html  
    CandidateFilter-class                   html  
    EnsembleSolver-class                    html  
    EnsembleSolver                          html  
    FootprintFilter-class                   html  
    FootprintFinder-class                   html  
    GeneOntologyFilter-class                html  
    HumanDHSFilter-class                    html  
    LassoPVSolver-class                     html  
    LassoPVSolver                           html  
    LassoSolver-class                       html  
    LassoSolver                             html  
    MotifMatcher-class                      html  
    finding level-2 HTML links ... done

    PCAMax                                  html  
    PearsonSolver-class                     html  
    PearsonSolver                           html  
    RandomForestSolver-class                html  
    RandomForestSolver                      html  
    RidgeSolver-class                       html  
    RidgeSolver                             html  
    Solver-class                            html  
    SpearmanSolver-class                    html  
    SpearmanSolver                          html  
    Trena-class                             html  
    VarianceFilter-class                    html  
    XGBoostSolver-class                     html  
    XGBoostSolver                           html  
    addStats                                html  
    addStatsSimple                          html  
    assessSnp                               html  
    closeDatabaseConnections                html  
    createGeneModelFromRegulatoryRegions    html  
    createGeneModelFromTfList               html  
    elasticNetSolver                        html  
    findMatchesByChromosomalRegion          html  
    getAssayData                            html  
    getAvailableSolvers                     html  
    getCandidates-FootprintFilter-method    html  
    getCandidates-GeneOntologyFilter-method
                                            html  
    getCandidates-HumanDHSFilter-method     html  
    getCandidates-VarianceFilter-method     html  
    getCandidates                           html  
    getChromLoc                             html  
    getCoverage                             html  
    getEncodeRegulatoryTableNames-HumanDHSFilter
                                            html  
    getFootprintsForGene                    html  
    getFootprintsInRegion                   html  
    getGeneModelTableColumnNames            html  
    getGenePromoterRegion                   html  
    getGtfGeneBioTypes                      html  
    getGtfMoleculeTypes                     html  
    getPfms                                 html  
    getPromoterRegionsAllGenes              html  
    getProximalPromoter                     html  
    getRegulators                           html  
    getRegulatoryChromosomalRegions         html  
    getRegulatoryRegions                    html  
    getRegulatoryTableColumnNames           html  
    getSequence                             html  
    getSolverNames                          html  
    getTarget                               html  
    normalizeModel                          html  
    parseChromLocString                     html  
    parseDatabaseUri                        html  
    rescalePredictorWeights                 html  
    run                                     html  
    show-HumanDHSFilter-method              html  
    show.BayesSpikeSolver                   html  
    show.BicorSolver                        html  
    show.EnsembleSolver                     html  
    show.LassoPVSolver                      html  
    show.LassoSolver                        html  
    show.MotifMatcher                       html  
    show.PearsonSolver                      html  
    show.RandomForestSolver                 html  
    show.RidgeSolver                        html  
    show.SpearmanSolver                     html  
    show.XGBoostSolver                      html  
    solve.BayesSpike                        html  
    solve.Bicor                             html  
    solve.Ensemble                          html  
    solve.Lasso                             html  
    solve.LassoPV                           html  
    solve.Pearson                           html  
    solve.RandomForest                      html  
    solve.Ridge                             html  
    solve.Spearman                          html  
    solve.XGBoost                           html  
    trena-package                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
See system.file("LICENSE", package="MotifDb") for use restrictions.
** testing if installed package can be loaded from final location
See system.file("LICENSE", package="MotifDb") for use restrictions.
** testing if installed package keeps a record of temporary installation path
* DONE (trena)
Making 'packages.html' ... done