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This page was generated on 2022-01-26 11:06:57 -0500 (Wed, 26 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4164
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4059
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4001
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4118
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for trackViewer on nebbiolo1


To the developers/maintainers of the trackViewer package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trackViewer.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1971/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trackViewer 1.31.2  (landing page)
Jianhong Ou
Snapshot Date: 2022-01-25 13:55:17 -0500 (Tue, 25 Jan 2022)
git_url: https://git.bioconductor.org/packages/trackViewer
git_branch: master
git_last_commit: c4044f4
git_last_commit_date: 2021-11-17 01:14:00 -0500 (Wed, 17 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: trackViewer
Version: 1.31.2
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL trackViewer
StartedAt: 2022-01-25 15:37:59 -0500 (Tue, 25 Jan 2022)
EndedAt: 2022-01-25 15:39:02 -0500 (Tue, 25 Jan 2022)
EllapsedTime: 63.6 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL trackViewer
###
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* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘trackViewer’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c hic.cpp -o hic.o
hic.cpp: In member function ‘void HicFileHead::readHeader(std::ifstream&)’:
hic.cpp:247:16: warning: unused variable ‘nviPosition’ [-Wunused-variable]
  247 |           long nviPosition = readLong(ifile);
      |                ^~~~~~~~~~~
hic.cpp:248:16: warning: unused variable ‘nviLength’ [-Wunused-variable]
  248 |           long nviLength = readLong(ifile);
      |                ^~~~~~~~~
hic.cpp: In function ‘std::vector<cellData> getByCoor(std::string, int, int, std::string, int, int, int, std::string, std::string, HicFileHead&, HicFileFoot&, std::ifstream&)’:
hic.cpp:751:19: warning: ‘*((void*)(& bd)+8).resolutions::nResolutions’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  751 |     for(int i=0; i<data.nResolutions; i++){
      |                  ~^~~~~~~~~~~~~~~~~~
hic.cpp:797:10: note: ‘*((void*)(& bd)+8).resolutions::nResolutions’ was declared here
  797 |     body bd;
      |          ^~
hic.cpp:797:10: warning: ‘*((void*)(& bd)+8).resolutions::res’ may be used uninitialized in this function [-Wmaybe-uninitialized]
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.15-bioc/R/lib -L/usr/local/lib -o trackViewer.so RcppExports.o hic.o -L/home/biocbuild/bbs-3.15-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.15-bioc/R/library/00LOCK-trackViewer/00new/trackViewer/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (trackViewer)