Back to Multiple platform build/check report for BioC 3.17
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

This page was generated on 2022-11-09 13:21:22 -0500 (Wed, 09 Nov 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_64R Under development (unstable) (2022-10-25 r83175) -- "Unsuffered Consequences" 4449
merida1macOS 10.14.6 Mojavex86_644.2.2 (2022-10-31) -- "Innocent and Trusting" 3992
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for topGO on merida1


To the developers/maintainers of the topGO package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/topGO.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2038/2151HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
topGO 2.51.0  (landing page)
Adrian Alexa
Snapshot Date: 2022-11-08 13:55:08 -0500 (Tue, 08 Nov 2022)
git_url: https://git.bioconductor.org/packages/topGO
git_branch: master
git_last_commit: 074dd0d
git_last_commit_date: 2022-11-01 11:03:20 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  NO, package depends on 'GO.db' which is not available

Summary

Package: topGO
Version: 2.51.0
Command: rm -rf topGO.buildbin-libdir && mkdir topGO.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh topGO_2.51.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R topGO.buildbin-libdir
StartedAt: 2022-11-09 09:43:38 -0500 (Wed, 09 Nov 2022)
EndedAt: 2022-11-09 09:44:49 -0500 (Wed, 09 Nov 2022)
EllapsedTime: 70.8 seconds
RetCode: 0
Status:   OK  
PackageFile: topGO_2.51.0.tgz
PackageFileSize: 2.124 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf topGO.buildbin-libdir && mkdir topGO.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh topGO_2.51.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R topGO.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=topGO.buildbin-libdir topGO_2.51.0.tar.gz'
>>>>>>> 

* installing *source* package ‘topGO’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package can be loaded from final location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package keeps a record of temporary installation path
* DONE (topGO)