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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:tidySpatialExperiment.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings tidySpatialExperiment_1.1.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/tidySpatialExperiment.Rcheck’
* using R version 4.4.0 Patched (2024-04-24 r86482)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.4
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tidySpatialExperiment/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tidySpatialExperiment’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tidySpatialExperiment’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘S4Vectors:::disableValidity’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
select_helper: no visible global function definition for ‘all_of’
join_features,SpatialExperiment: no visible binding for global variable
  ‘index’
Undefined global functions or variables:
  all_of index
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
aggregate_cells 10.304  0.384  11.648
right_join       6.205  0.079   7.416
rename           5.293  0.064   6.607
inner_join       5.293  0.055   5.878
left_join        5.288  0.055   5.929
sample_n         5.280  0.053   5.705
unnest           5.230  0.048   5.436
bind_rows        5.144  0.061   5.884
join_features    5.099  0.083   5.859
arrange          5.065  0.086   5.579
count            5.067  0.057   5.704
ggplot           5.063  0.054   5.509
bind_cols        5.058  0.058   5.732
nest             4.926  0.054   5.489
plot_ly          4.836  0.116   5.366
extract          4.875  0.051   5.108
filter           4.869  0.051   5.010
rectangle        4.864  0.050   5.630
ellipse          4.859  0.053   5.201
separate         4.856  0.052   5.240
unite            4.847  0.054   5.267
group_by         4.845  0.050   5.345
mutate           4.835  0.052   5.422
slice            4.796  0.049   5.254
as_tibble        4.781  0.059   5.368
formatting       4.786  0.050   5.150
rowwise          4.733  0.052   5.181
glimpse          4.717  0.053   5.215
pivot_longer     4.709  0.045   5.211
distinct         4.674  0.050   5.014
pull             4.645  0.057   5.378
summarise        4.643  0.048   5.036
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/tidySpatialExperiment.Rcheck/00check.log’
for details.