############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ssize.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ssize_1.79.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/ssize.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.4 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ssize/DESCRIPTION’ ... OK * this is package ‘ssize’ version ‘1.79.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ssize’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘xtable’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE crit.fn: no visible global function definition for ‘pt’ delta: no visible global function definition for ‘power.t.test’ delta.plot: no visible global function definition for ‘ecdf’ delta.plot: no visible global function definition for ‘axis’ delta.plot: no visible global function definition for ‘par’ delta.plot: no visible global function definition for ‘lines’ delta.plot: no visible global function definition for ‘text’ pow: no visible global function definition for ‘power.t.test’ power.plot: no visible global function definition for ‘ecdf’ power.plot: no visible global function definition for ‘axis’ power.plot: no visible global function definition for ‘par’ power.plot: no visible global function definition for ‘lines’ power.plot: no visible global function definition for ‘text’ power.t.test.FDR: no visible global function definition for ‘uniroot’ ssize: no visible global function definition for ‘power.t.test’ ssize.plot: no visible global function definition for ‘ecdf’ ssize.plot: no visible global function definition for ‘axis’ ssize.plot: no visible global function definition for ‘par’ ssize.plot: no visible global function definition for ‘lines’ ssize.plot: no visible global function definition for ‘text’ Undefined global functions or variables: axis ecdf lines par power.t.test pt text uniroot Consider adding importFrom("graphics", "axis", "lines", "par", "text") importFrom("stats", "ecdf", "power.t.test", "pt", "uniroot") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed pow 6.155 0.127 9.107 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/ssize.Rcheck/00check.log’ for details.