Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2021-10-22 12:04:45 -0400 (Fri, 22 Oct 2021).

BUILD BIN results for splatter on riesling1

To the developers/maintainers of the splatter package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/splatter.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1854/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
splatter 1.17.3  (landing page)
Luke Zappia
Snapshot Date: 2021-10-21 14:50:08 -0400 (Thu, 21 Oct 2021)
git_url: https://git.bioconductor.org/packages/splatter
git_branch: master
git_last_commit: 4edfb8b
git_last_commit_date: 2021-10-07 08:13:30 -0400 (Thu, 07 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    NA  

Summary

Package: splatter
Version: 1.17.3
Command: rm -rf splatter.buildbin-libdir && mkdir splatter.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=splatter.buildbin-libdir splatter_1.17.3.tar.gz
StartedAt: 2021-10-22 07:55:53 -0400 (Fri, 22 Oct 2021)
EndedAt: 2021-10-22 08:00:42 -0400 (Fri, 22 Oct 2021)
EllapsedTime: 288.7 seconds
RetCode: 0
Status:   OK  
PackageFile: splatter_1.17.3.zip
PackageFileSize: 3.887 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf splatter.buildbin-libdir && mkdir splatter.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=splatter.buildbin-libdir splatter_1.17.3.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'splatter' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'splatter'
    finding HTML links ... done
    BASiCSEstimate                          html  
    BASiCSParams                            html  
    BASiCSSimulate                          html  
    KersplatParams                          html  
    Lun2Params                              html  
    LunParams                               html  
    MFAParams                               html  
    Params                                  html  
    PhenoParams                             html  
    SCDDParams                              html  
    SimpleParams                            html  
    SparseDCParams                          html  
    SplatParams                             html  
    SplatPopParams                          html  
    ZINBParams                              html  
    addFeatureStats                         html  
    finding level-2 HTML links ... done

    addGeneLengths                          html  
    bridge                                  html  
    bringItemsForward                       html  
    checkDependencies                       html  
    co.var                                  html  
    compareSCEs                             html  
    diffSCEs                                html  
    expandParams                            html  
    getBetaStepProbs                        html  
    getCounts                               html  
    getLNormFactors                         html  
    getParam                                html  
    getParams                               html  
    getPathOrder                            html  
    kersplatEstBCV                          html  
    kersplatEstLib                          html  
    kersplatEstMean                         html  
    kersplatEstimate                        html  
    kersplatGenNetwork                      html  
    kersplatSample                          html  
    kersplatSelectRegs                      html  
    kersplatSetup                           html  
    kersplatSimAmbientCounts                html  
    kersplatSimCellCounts                   html  
    kersplatSimCellMeans                    html  
    kersplatSimCounts                       html  
    kersplatSimGeneMeans                    html  
    kersplatSimLibSizes                     html  
    kersplatSimPaths                        html  
    kersplatSimulate                        html  
    listSims                                html  
    logistic                                html  
    lun2Estimate                            html  
    lun2Simulate                            html  
    lunEstimate                             html  
    lunSimulate                             html  
    makeCompPanel                           html  
    makeDiffPanel                           html  
    makeOverallPanel                        html  
    mfaEstimate                             html  
    mfaSimulate                             html  
    minimiseSCE                             html  
    mockBulkMatrix                          html  
    mockBulkeQTL                            html  
    mockEmpiricalSet                        html  
    mockGFF                                 html  
    mockVCF                                 html  
    newParams                               html  
    phenoEstimate                           html  
    phenoSimulate                           html  
    rbindMatched                            html  
    sampleDensity                           html  
    scDDEstimate                            html  
    scDDSimulate                            html  
    selectFit                               html  
    setParam                                html  
    setParamUnchecked                       html  
    setParams                               html  
    setParamsUnchecked                      html  
    showDFs                                 html  
    showPP                                  html  
    showValues                              html  
    simpleEstimate                          html  
    simpleSimulate                          html  
    sparseDCEstimate                        html  
    sparseDCSimulate                        html  
    sparsifyMatrices                        html  
    splatEstBCV                             html  
    splatEstDropout                         html  
    splatEstLib                             html  
    splatEstMean                            html  
    splatEstOutlier                         html  
    splatEstimate                           html  
    splatPopAssignMeans                     html  
    splatPopCleanSCE                        html  
    splatPopConditionEffects                html  
    splatPopConditionalEffects              html  
    splatPopDesignBatches                   html  
    splatPopDesignConditions                html  
    splatPopEstimate                        html  
    splatPopEstimateEffectSize              html  
    splatPopEstimateMeanCV                  html  
    splatPopGroupEffects                    html  
    splatPopParseEmpirical                  html  
    splatPopParseGenes                      html  
    splatPopParseVCF                        html  
    splatPopQuantNorm                       html  
    splatPopQuantNormKey                    html  
    splatPopSimBatchEffects                 html  
    splatPopSimConditionalEffects           html  
    splatPopSimEffects                      html  
    splatPopSimGeneMeans                    html  
    splatPopSimMeans                        html  
    splatPopSimulate                        html  
    splatPopSimulateMeans                   html  
    splatPopSimulateSC                      html  
    splatPopSimulateSample                  html  
    splatPopeQTLEffects                     html  
    splatSimBCVMeans                        html  
    splatSimBatchCellMeans                  html  
    splatSimBatchEffects                    html  
    splatSimCellMeans                       html  
    splatSimDE                              html  
    splatSimDropout                         html  
    splatSimGeneMeans                       html  
    splatSimLibSizes                        html  
    splatSimTrueCounts                      html  
    splatSimulate                           html  
    splatter                                html  
    summariseDiff                           html  
    summariseKS                             html  
    summariseStats                          html  
    tidyStatSumm                            html  
    winsorize                               html  
    zinbEstimate                            html  
    zinbSimulate                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'splatter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'splatter' as splatter_1.17.3.zip
* DONE (splatter)