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This page was generated on 2022-01-17 11:08:23 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for seqCAT on riesling1


To the developers/maintainers of the seqCAT package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/seqCAT.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1758/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqCAT 1.17.0  (landing page)
Erik Fasterius
Snapshot Date: 2022-01-16 13:55:18 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/seqCAT
git_branch: master
git_last_commit: eef6de2
git_last_commit_date: 2021-10-26 12:38:15 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: seqCAT
Version: 1.17.0
Command: rm -rf seqCAT.buildbin-libdir && mkdir seqCAT.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=seqCAT.buildbin-libdir seqCAT_1.17.0.tar.gz
StartedAt: 2022-01-16 21:24:18 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 21:25:37 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 78.8 seconds
RetCode: 0
Status:   OK  
PackageFile: seqCAT_1.17.0.zip
PackageFileSize: 1.891 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf seqCAT.buildbin-libdir && mkdir seqCAT.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=seqCAT.buildbin-libdir seqCAT_1.17.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'seqCAT' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'seqCAT'
    finding HTML links ... done
    calculate_similarity                    html  
    compare_many                            html  
    compare_profiles                        html  
    create_profile                          html  
    create_profiles                         html  
    filter_duplicates                       html  
    filter_variants                         html  
    list_cosmic                             html  
    list_variants                           html  
    plot_heatmap                            html  
    plot_impacts                            html  
    plot_variant_list                       html  
    read_cosmic                             html  
    read_profile                            html  
    read_profiles                           html  
    seqCAT                                  html  
    test_comparison                         html  
    test_profile_1                          html  
    test_profile_2                          html  
    test_profile_3                          html  
    test_similarities                       html  
    test_variant_list                       html  
    write_profile                           html  
    write_profiles                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'seqCAT' as seqCAT_1.17.0.zip
* DONE (seqCAT)