############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scone ### ############################################################################## ############################################################################## * checking for file ‘scone/DESCRIPTION’ ... OK * preparing ‘scone’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘PsiNorm.Rmd’ using rmarkdown 2024-06-10 08:15:26.139 R[50420:39419244] XType: Using static font registry. --- finished re-building ‘PsiNorm.Rmd’ --- re-building ‘sconeTutorial.Rmd’ using rmarkdown Quitting from lines 75-81 [datain] (sconeTutorial.Rmd) Error: processing vignette 'sconeTutorial.Rmd' failed with diagnostics: failed to open file at '~/Library/Caches/gypsum/bucket/scRNAseq/legacy/2023-12-18/fluidigm/other_data/list_contents.json.gz' --- failed re-building ‘sconeTutorial.Rmd’ SUMMARY: processing the following file failed: ‘sconeTutorial.Rmd’ Error: Vignette re-building failed. Execution halted