############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf scde.buildbin-libdir && mkdir scde.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh scde_2.27.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R scde.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=scde.buildbin-libdir scde_2.27.0.tar.gz' >>>>>>> * installing *source* package ‘scde’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’ using SDK: ‘’ clang++ -mmacosx-version-min=10.13 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -g -O2 -c bwpca.cpp -o bwpca.o bwpca.cpp:28:14: error: no member named 'random_shuffle' in namespace 'std' std::random_shuffle(ind.begin(), ind.end()); ~~~~~^ bwpca.cpp:45:14: error: no member named 'random_shuffle' in namespace 'std' std::random_shuffle(ind.begin(), ind.end()); ~~~~~^ bwpca.cpp:105:11: warning: explicitly assigning value of variable of type 'arma::mat' (aka 'Mat') to itself [-Wself-assign-overloaded] totvm %=totvm; ~~~~~ ^ ~~~~~ bwpca.cpp:122:15: warning: explicitly assigning value of variable of type 'arma::mat' (aka 'Mat') to itself [-Wself-assign-overloaded] delta %=delta; ~~~~~ ^ ~~~~~ bwpca.cpp:147:19: warning: explicitly assigning value of variable of type 'arma::mat' (aka 'Mat') to itself [-Wself-assign-overloaded] delta %=delta; ~~~~~ ^ ~~~~~ bwpca.cpp:271:19: warning: explicitly assigning value of variable of type 'arma::mat' (aka 'Mat') to itself [-Wself-assign-overloaded] delta %=delta; ~~~~~ ^ ~~~~~ 4 warnings and 2 errors generated. make: *** [bwpca.o] Error 1 ERROR: compilation failed for package ‘scde’ * removing ‘/Users/biocbuild/bbs-3.17-bioc/meat/scde.buildbin-libdir/scde’