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This page was generated on 2022-01-15 11:08:27 -0500 (Sat, 15 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4160
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4055
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3997
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4114
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for rgsepd on riesling1


To the developers/maintainers of the rgsepd package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rgsepd.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1590/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rgsepd 1.27.0  (landing page)
Karl Stamm
Snapshot Date: 2022-01-14 13:55:18 -0500 (Fri, 14 Jan 2022)
git_url: https://git.bioconductor.org/packages/rgsepd
git_branch: master
git_last_commit: 517eb1e
git_last_commit_date: 2021-10-26 12:18:10 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: rgsepd
Version: 1.27.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL rgsepd
StartedAt: 2022-01-14 16:09:01 -0500 (Fri, 14 Jan 2022)
EndedAt: 2022-01-14 16:10:44 -0500 (Fri, 14 Jan 2022)
EllapsedTime: 103.2 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL rgsepd
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'rgsepd' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rgsepd'
    finding HTML links ... done
    DisplayName                             html  
    ExtractProjection                       html  
    GSEPD_ChangeConditions                  html  
    GSEPD_ChangeOutput                      html  
    GSEPD_DEGHeatmap                        html  
    GSEPD_Export_DESeq                      html  
    GSEPD_Heatmap                           html  
    GSEPD_INIT                              html  
    GSEPD_PCA_Plot                          html  
    GSEPD_PCA_Spec                          html  
    GSEPD_Process                           html  
    GSEPD_ProcessAll                        html  
    GSEPD_PullDEG                           html  
    IlluminaBodymap                         html  
    IlluminaBodymapMeta                     html  
    Name_to_RefSeq                          html  
    rgsepd-package                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
** testing if installed package can be loaded from final location
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
** testing if installed package keeps a record of temporary installation path
* DONE (rgsepd)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'SigsPack' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'SNPhood' is missing or broken
 done