Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-03-18 11:38:11 -0400 (Mon, 18 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-03-06 r86056) -- "Unsuffered Consequences" | 4685 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-03-06 r86056 ucrt) -- "Unsuffered Consequences" | 4423 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-03-04 r86048) -- "Unsuffered Consequences" | 4450 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-03-06 r86056) -- "Unsuffered Consequences" | 4361 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1702/2257 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
regutools 1.15.0 (landing page) Joselyn Chavez
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the regutools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/regutools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: regutools |
Version: 1.15.0 |
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:regutools.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings regutools_1.15.0.tar.gz |
StartedAt: 2024-03-18 05:38:45 -0400 (Mon, 18 Mar 2024) |
EndedAt: 2024-03-18 05:47:32 -0400 (Mon, 18 Mar 2024) |
EllapsedTime: 527.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: regutools.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:regutools.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings regutools_1.15.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/regutools.Rcheck' * using R Under development (unstable) (2024-03-06 r86056 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'regutools/DESCRIPTION' ... OK * this is package 'regutools' version '1.15.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'regutools' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot_dna_objects 8.91 0.90 9.85 build_condition 4.17 0.75 5.15 get_regulatory_network 2.76 0.53 5.37 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
regutools.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL regutools ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'regutools' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (regutools)
regutools.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-03-06 r86056 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("regutools") > > test_check("regutools") [ FAIL 0 | WARN 2 | SKIP 0 | PASS 110 ] [ FAIL 0 | WARN 2 | SKIP 0 | PASS 110 ] Warning message: call dbDisconnect() when finished working with a connection > > proc.time() user system elapsed 68.21 10.15 85.37
regutools.Rcheck/regutools-Ex.timings
name | user | system | elapsed | |
build_condition | 4.17 | 0.75 | 5.15 | |
connect_database | 3.20 | 0.61 | 3.86 | |
convert_to_biostrings | 3.58 | 0.63 | 4.75 | |
convert_to_granges | 3.35 | 0.71 | 4.09 | |
existing_intervals | 0 | 0 | 0 | |
existing_partial_match | 0 | 0 | 0 | |
get_binding_sites | 3.04 | 0.66 | 4.03 | |
get_dataset | 3.43 | 0.63 | 4.06 | |
get_dna_objects | 3.15 | 0.69 | 3.94 | |
get_gene_regulators | 3.20 | 0.59 | 3.90 | |
get_gene_synonyms | 2.79 | 0.52 | 3.32 | |
get_regulatory_network | 2.76 | 0.53 | 5.37 | |
get_regulatory_summary | 3.36 | 0.52 | 3.89 | |
guess_id | 2.94 | 0.64 | 3.60 | |
list_attributes | 3.05 | 0.65 | 3.73 | |
list_datasets | 3.21 | 0.60 | 3.84 | |
non_existing_intervals | 0 | 0 | 0 | |
plot_dna_objects | 8.91 | 0.90 | 9.85 | |
regulondb | 2.95 | 0.55 | 3.51 | |