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This page was generated on 2024-03-04 11:38:27 -0500 (Mon, 04 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4676
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4414
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4441
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4417
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1723/2251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rGREAT 2.5.3  (landing page)
Zuguang Gu
Snapshot Date: 2024-03-01 14:00:22 -0500 (Fri, 01 Mar 2024)
git_url: https://git.bioconductor.org/packages/rGREAT
git_branch: devel
git_last_commit: a8b2403
git_last_commit_date: 2024-02-05 08:42:06 -0500 (Mon, 05 Feb 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR    OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  ERROR    OK    ERROR    OK  
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    OK    ERROR  

CHECK results for rGREAT on palomino3


To the developers/maintainers of the rGREAT package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rGREAT.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: rGREAT
Version: 2.5.3
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:rGREAT.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings rGREAT_2.5.3.tar.gz
StartedAt: 2024-03-02 07:03:17 -0500 (Sat, 02 Mar 2024)
EndedAt: 2024-03-02 07:03:29 -0500 (Sat, 02 Mar 2024)
EllapsedTime: 11.8 seconds
RetCode: 1
Status:   ERROR  
CheckDir: rGREAT.Rcheck
Warnings: NA

Command output

##############################################################################
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###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:rGREAT.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings rGREAT_2.5.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/rGREAT.Rcheck'
* using R Under development (unstable) (2024-01-14 r85805 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'rGREAT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rGREAT' version '2.5.3'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'BioMartGOGeneSets'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rGREAT' can be installed ... ERROR
Installation failed.
See 'F:/biocbuild/bbs-3.19-bioc/meat/rGREAT.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR, 1 NOTE
See
  'F:/biocbuild/bbs-3.19-bioc/meat/rGREAT.Rcheck/00check.log'
for details.


Installation output

rGREAT.Rcheck/00install.out

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###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL rGREAT
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'rGREAT' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.3.0'
C:\rtools43\x86_64-w64-mingw32.static.posix\bin\nm.exe: RcppExports.o: file format not recognized
C:\rtools43\x86_64-w64-mingw32.static.posix\bin\nm.exe: reduce_by_start_and_end.o: file format not recognized
g++ -std=gnu++17 -shared -s -static-libgcc -o rGREAT.dll tmp.def RcppExports.o reduce_by_start_and_end.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
RcppExports.o: file not recognized: file format not recognized
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'rGREAT'
* removing 'F:/biocbuild/bbs-3.19-bioc/R/library/rGREAT'

Tests output


Example timings